{
"description": "Specimen that will be examined by a laboratory.",
"_filename": "StructureDefinition-path-Request.Specimen.json",
"package_name": "medmij.fhir.nl.r4.pathology",
"date": null,
"derivation": "constraint",
"publisher": "MedMij",
"fhirVersion": "4.0.1",
"purpose": "This Specimen resource represents the specimen-related concepts from the Request Clinical Information Model (CIM) for patient use cases in the context of Pathology.",
"name": "PathRequestSpecimen",
"mapping": [ {
"name": "Mercurius Core Dataset 2.0",
"identity": "mercurius-core-dataset-2-0"
}, {
"name": "Dataset MedMij R4 Core 1.2.0 20260923",
"identity": "medmij-core-dataset-120-20260923"
}, {
"name": "Dataset Pathologie MedMij 1.0.0-alpha.3 20260923",
"identity": "path-dataset-100-alpha3-20260923"
} ],
"abstract": false,
"copyright": "Copyright and related rights waived via CC0, https://creativecommons.org/publicdomain/zero/1.0/. This does not apply to information from third parties, for example a medical terminology system. The implementer alone is responsible for identifying and obtaining any necessary licenses or authorizations to utilize third party IP in connection with the specification or otherwise.",
"type": "Specimen",
"experimental": null,
"resourceType": "StructureDefinition",
"title": "path Request.Specimen",
"package_version": "1.0.0-alpha.3",
"status": "draft",
"id": "f1a9817b-7355-4121-87aa-08d0ff03378e",
"kind": "resource",
"url": "http://medmij.nl/fhir/StructureDefinition/path-Request.Specimen",
"version": "1.0.0-alpha.3",
"differential": {
"element": [ {
"id": "Specimen",
"path": "Specimen",
"alias": [ "Monster" ],
"short": "Specimen",
"comment": "This resource is used to convey either the primary specimen or an individual sample taken from that specimen. In the latter case, the `.parent` refers to the Specimen resource corresponding to the primary specimen.",
"mapping": [ {
"map": "path-dataelement-8",
"comment": "Specimen",
"identity": "path-dataset-100-alpha3-20260923"
}, {
"map": "path-dataelement-15",
"comment": "Sample",
"identity": "path-dataset-100-alpha3-20260923"
} ],
"definition": "Specimen that will be examined by a laboratory."
}, {
"id": "Specimen.meta",
"min": 1,
"path": "Specimen.meta"
}, {
"id": "Specimen.meta.tag",
"min": 1,
"path": "Specimen.meta.tag",
"slicing": {
"rules": "open",
"discriminator": [ {
"path": "$this",
"type": "value"
} ]
}
}, {
"path": "Specimen.meta.tag",
"min": 1,
"definition": "The type of the healthcare provider responsible for the delivered care, or more specifically, the specialty of the department and/or health professional that delivered care. It enables patients and systems to interpret the origin and context of medical data.",
"short": "CareType",
"mapping": [ {
"map": "medmij-core-dataelement-123",
"comment": "CareType",
"identity": "medmij-core-dataset-120-20260923"
} ],
"slicing": {
"rules": "open",
"discriminator": [ {
"path": "$this",
"type": "value"
} ]
},
"sliceName": "careType",
"binding": {
"strength": "required",
"valueSet": "http://decor.nictiz.nl/fhir/ValueSet/2.16.840.1.113883.2.4.3.11.60.40.2.17.2.4--20200901000000"
},
"alias": [ "Zorgtype" ],
"max": "*",
"id": "Specimen.meta.tag:careType",
"comment": "Note that the `careType` slice is a slice on `.meta.tag`, which might not be immediately clear based on the rendering."
}, {
"id": "Specimen.meta.tag:careType/pathology",
"max": "1",
"min": 1,
"path": "Specimen.meta.tag",
"comment": "Note that the `pathology` slice is a reslice of the `careType` slice, which might not be immediately clear based on the rendering.",
"sliceName": "careType/pathology",
"patternCoding": {
"code": "0388",
"system": "urn:oid:2.16.840.1.113883.2.4.6.7"
}
}, {
"id": "Specimen.identifier",
"min": 1,
"path": "Specimen.identifier",
"slicing": {
"rules": "open",
"discriminator": [ {
"path": "$this",
"type": "profile"
} ]
}
}, {
"path": "Specimen.identifier",
"min": 1,
"definition": "Identifier of the specimen.",
"short": "IdentificationNumber / SpecimenIdentifier / SampleIdentifier",
"mapping": [ {
"map": "path-dataelement-14",
"comment": "SpecimenIdentifier",
"identity": "path-dataset-100-alpha3-20260923"
}, {
"map": "path-dataelement-16",
"comment": "SampleNumber (implicit)",
"identity": "path-dataset-100-alpha3-20260923"
} ],
"type": [ {
"code": "Identifier",
"profile": [ "http://medmij.nl/fhir/StructureDefinition/path-Report.ReportIdentifier" ]
} ],
"sliceName": "specimenIdentifier",
"alias": [ "Identificatienummer", "MonsterIdentificatienummer", "SampleIdentificatienummer" ],
"max": "1",
"id": "Specimen.identifier:specimenIdentifier",
"comment": "This element is used to convey the identifier of either the primary specimen or an individual sample taken from that specimen, based on which specimen this resource represents.\n\n * In the former case, as the specimen is always directly linked to a request in Mercurius, this identifier's value equals the RequestIdentifier value, appended with _-0_. In particular, this identifier attains a `.value` of the form _[TCSB]YY-nnnnn-0_ or _[TCSB]YY-nnnnnn-0_ (based on the laboratory the report originates from), e.g. T26-012345-0.\n * In the latter case, this identifier's value equals the RequestIdentifier value, appended with _-[SampleNumber]_. In particular, this identifier attains a `.value` of the form _[TCSB]YY-nnnnn-[SampleNumber]_ or _[TCSB]YY-nnnnnn-[SampleNumber]_ (based on the laboratory the report originates from), e.g. T26-012345-1.\n\nIn both cases, the `.system` SHALL be of the form _urn:oid:2.16.840.1.113883.2.4.3.23.3.N.1_ where _N_ is the lab number (i.e. _labid_)."
}, {
"id": "Specimen.type",
"min": 1,
"path": "Specimen.type",
"alias": [ "AardMateriaal" ],
"short": "SpecimenMaterial",
"comment": "The (string) value of the SpecimenMaterial concept present in the source system SHALL be translated to a SNOMED CT code using the [Palga On-line Thesaurus](https://www.palga.nl/voor-pathologen/palga-on-line-thesaurus), if possible. In any case, the original value SHALL be conveyed via `.text`.",
"mapping": [ {
"map": "mercurius-core-rubriek-76",
"comment": "aardmateriaal",
"identity": "mercurius-core-dataset-2-0"
} ],
"definition": "Type of specimen."
}, {
"id": "Specimen.type.coding.system",
"path": "Specimen.type.coding.system",
"patternUri": "http://snomed.info/sct"
}, {
"id": "Specimen.type.text",
"min": 1,
"path": "Specimen.type.text"
}, {
"id": "Specimen.subject",
"min": 1,
"path": "Specimen.subject",
"type": [ {
"code": "Reference",
"targetProfile": [ "http://hl7.org/fhir/StructureDefinition/Patient", "http://medmij.nl/fhir/StructureDefinition/path-Patient" ]
} ],
"alias": [ "Patiënt" ],
"short": "Patient",
"mapping": [ {
"map": "medmij-core-dataelement-116",
"comment": "Patient",
"identity": "medmij-core-dataset-120-20260923"
} ],
"definition": "The patient as subject of the information."
}, {
"id": "Specimen.receivedTime",
"min": 1,
"path": "Specimen.receivedTime",
"alias": [ "DatumOntvangst" ],
"short": "ReceivedDate",
"mapping": [ {
"map": "mercurius-core-rubriek-80",
"comment": "datumontvangst",
"identity": "mercurius-core-dataset-2-0"
} ],
"definition": "Date when specimen is received at the laboratory."
}, {
"id": "Specimen.parent",
"path": "Specimen.parent",
"type": [ {
"code": "Reference",
"targetProfile": [ "http://hl7.org/fhir/StructureDefinition/Specimen", "http://medmij.nl/fhir/StructureDefinition/path-Request.Specimen" ]
} ],
"comment": "If this Specimen resource corresponds to a sample taken from the primary specimen, the latter is referenced here."
}, {
"id": "Specimen.collection.collected[x]",
"path": "Specimen.collection.collected[x]",
"slicing": {
"rules": "open",
"ordered": false,
"discriminator": [ {
"path": "$this",
"type": "type"
} ]
}
}, {
"path": "Specimen.collection.collected[x]",
"min": 0,
"definition": "Date when specimen is taken from patient.",
"short": "CollectionDate",
"mapping": [ {
"map": "mercurius-core-rubriek-77",
"comment": "datumafname",
"identity": "mercurius-core-dataset-2-0"
} ],
"type": [ {
"code": "dateTime"
} ],
"sliceName": "collectedDateTime",
"alias": [ "DatumAfname" ],
"max": "1",
"id": "Specimen.collection.collected[x]:collectedDateTime"
}, {
"id": "Specimen.collection.method",
"path": "Specimen.collection.method",
"alias": [ "Verkrijgingswijze" ],
"short": "CollectionMethod",
"comment": "The (string) value of the CollectionMethod concept present in the source system SHALL be translated to a SNOMED CT code using the [Palga On-line Thesaurus](https://www.palga.nl/voor-pathologen/palga-on-line-thesaurus), if possible. In any case, the original value SHALL be conveyed via `.text`.",
"mapping": [ {
"map": "mercurius-core-rubriek-87",
"comment": "verkrijgingswijze",
"identity": "mercurius-core-dataset-2-0"
} ],
"definition": "The way the specimen is collected (biopsy, resection, etc.)."
}, {
"id": "Specimen.collection.method.coding.system",
"path": "Specimen.collection.method.coding.system",
"patternUri": "http://snomed.info/sct"
}, {
"id": "Specimen.collection.method.text",
"min": 1,
"path": "Specimen.collection.method.text"
} ]
},
"contact": [ {
"name": "MedMij",
"telecom": [ {
"use": "work",
"value": "info@medmij.nl",
"system": "email"
} ]
} ],
"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Specimen"
}