{
  "description": "The data formats relevant to Genomic Study analysis.",
  "compose": {
    "include": [ {
      "system": "http://hl7.org/fhir/genomicstudy-dataformat"
    } ]
  },
  "_filename": "ValueSet-genomicstudy-dataformat.json",
  "package_name": "hl7.fhir.r6.expansions",
  "date": "2022-08-17T15:02:11-05:00",
  "meta": {
    "profile": [ "http://hl7.org/fhir/StructureDefinition/shareablevalueset" ],
    "lastUpdated": "2025-04-01T12:16:37.966+11:00"
  },
  "publisher": "HL7 (FHIR Project)",
  "jurisdiction": [ {
    "coding": [ {
      "code": "001",
      "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
      "display": "World"
    } ]
  } ],
  "name": "GenomicStudyDataFormat",
  "type": null,
  "experimental": "false",
  "resourceType": "ValueSet",
  "expansion": {
    "total": 40,
    "offset": 0,
    "contains": [ {
      "code": "bam",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "BAM"
    }, {
      "code": "bed",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "BED"
    }, {
      "code": "bedpe",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "BEDPE"
    }, {
      "code": "bedgraph",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "BedGraph"
    }, {
      "code": "bigbed",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "bigBed"
    }, {
      "code": "bigWig",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "bigWig"
    }, {
      "code": "birdsuite-files",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "Birdsuite-Files"
    }, {
      "code": "broadpeak",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "broadPeak"
    }, {
      "code": "cbs",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "CBS"
    }, {
      "code": "chemical-reactivity-probing-profiles",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "Chemical-Reactivity-Probing-Profiles"
    }, {
      "code": "chrom-sizes",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "chrom-sizes"
    }, {
      "code": "cn",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "CN"
    }, {
      "code": "custom-file-formats",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "Custom-File-Formats"
    }, {
      "code": "cytoband",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "Cytoband"
    }, {
      "code": "fasta",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "FASTA"
    }, {
      "code": "gct",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "GCT"
    }, {
      "code": "cram",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "CRAM"
    }, {
      "code": "genepred",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "genePred"
    }, {
      "code": "gff-gtf",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "GFF/GTF"
    }, {
      "code": "gistic",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "GISTIC"
    }, {
      "code": "goby",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "Goby"
    }, {
      "code": "gwas",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "GWAS"
    }, {
      "code": "igv",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "IGV"
    }, {
      "code": "loh",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "LOH"
    }, {
      "code": "maf-multiple-alignment-format",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "MAF-Multiple Alignment Format"
    }, {
      "code": "maf-mutation-annotation-format",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "MAF-Mutation-Annotation-Format"
    }, {
      "code": "merged-bam-file",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "Merged BAM File"
    }, {
      "code": "mut",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "MUT"
    }, {
      "code": "narrowpeak",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "narrowPeak"
    }, {
      "code": "psl",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "PSL"
    }, {
      "code": "res",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "RES"
    }, {
      "code": "rna-secondary-structure-formats",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "RNA-Secondary-Structure-Formats"
    }, {
      "code": "sam",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "SAM"
    }, {
      "code": "sample-info-attributes-file",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "Sample-Info-Attributes-file"
    }, {
      "code": "seg",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "SEG"
    }, {
      "code": "tdf",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "TDF"
    }, {
      "code": "track-line",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "Track Line"
    }, {
      "code": "type-line",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "Type Line"
    }, {
      "code": "vcf",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "VCF"
    }, {
      "code": "wig",
      "system": "http://hl7.org/fhir/genomicstudy-dataformat",
      "display": "WIG"
    } ],
    "parameter": [ {
      "name": "excludeNested",
      "valueBoolean": true
    }, {
      "name": "includeDesignations",
      "valueBoolean": true
    }, {
      "name": "count",
      "valueInteger": 1000
    }, {
      "name": "offset",
      "valueInteger": 0
    }, {
      "name": "warning-experimental",
      "valueUri": "http://hl7.org/fhir/genomicstudy-dataformat|6.0.0-ballot3"
    }, {
      "name": "used-codesystem",
      "valueUri": "http://hl7.org/fhir/genomicstudy-dataformat|6.0.0-ballot3"
    } ],
    "timestamp": "2025-04-01T12:21:09+11:00",
    "identifier": "urn:uuid:fc67fa0b-880e-40c7-bbf8-a481cc70e6aa"
  },
  "title": "Genomic Study Data Format",
  "package_version": "6.0.0-ballot3",
  "extension": [ {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
    "valueCode": "cg"
  }, {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
    "valueCode": "trial-use"
  }, {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
    "valueInteger": 1
  } ],
  "status": "draft",
  "id": "e1f3d580-3b62-4d4c-9aff-60d8e9abc511",
  "kind": null,
  "url": "http://hl7.org/fhir/ValueSet/genomicstudy-dataformat",
  "identifier": [ {
    "value": "urn:oid:2.16.840.1.113883.4.642.3.3084",
    "system": "urn:ietf:rfc:3986"
  } ],
  "immutable": false,
  "version": "6.0.0-ballot3",
  "contact": [ {
    "telecom": [ {
      "value": "http://hl7.org/fhir",
      "system": "url"
    }, {
      "value": "fhir@lists.hl7.org",
      "system": "email"
    } ]
  } ]
}