{
  "description": "This mapping maps FHIR AllergyIntolerance instances to OMOP Observation Table objects.",
  "_filename": "StructureMap-AllergyMap.json",
  "package_name": "hl7.fhir.uv.omop",
  "date": "2026-04-30T00:07:42+10:00",
  "group": [ {
    "name": "Observation",
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      "name": "id",
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        "context": "src",
        "element": "id"
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        "element": "observation_id",
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          "valueString": "1"
        } ],
        "transform": "copy"
      } ],
      "documentation": "OMOP Observation ID would be a map from FHIR ID to an external key"
    }, {
      "name": "patient",
      "source": [ {
        "context": "src",
        "element": "patient"
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      "target": [ {
        "context": "tgt",
        "element": "person_id",
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          "valueString": "1"
        } ],
        "transform": "copy"
      } ],
      "documentation": "OMOP Person ID would be a map from the FHIR Allergy Patient reference to an external key"
    }, {
      "name": "encounter",
      "source": [ {
        "context": "src",
        "element": "encounter"
      } ],
      "target": [ {
        "context": "tgt",
        "element": "visit_occurrence_id",
        "parameter": [ {
          "valueString": "1"
        } ],
        "transform": "copy"
      } ],
      "documentation": "OMOP Visit Occurrence ID would be a map from the FHIR Allergy Encounter reference to an external key"
    }, {
      "name": "type",
      "rule": [ {
        "name": "coding",
        "rule": [ {
          "name": "code",
          "rule": [ {
            "name": "category",
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              "context": "src",
              "element": "category",
              "variable": "category"
            } ],
            "target": [ {
              "context": "tgt",
              "element": "observation_concept_id",
              "parameter": [ {
                "valueId": "category"
              }, {
                "valueString": "http://hl7.org/fhir/uv/omop/ConceptMap/AllergyType"
              }, {
                "valueString": "code"
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              "transform": "translate"
            } ]
          } ],
          "source": [ {
            "context": "sc",
            "element": "code",
            "variable": "code",
            "condition": "(code = 'allergy')"
          } ]
        }, {
          "name": "code",
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              "element": "category",
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            "target": [ {
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              "element": "observation_concept_id",
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                "valueString": "http://hl7.org/fhir/uv/omop/ConceptMap/IntoleranceType"
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              "transform": "translate"
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            "element": "code",
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          "target": [ {
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            "element": "value_as_concept_id",
            "parameter": [ {
              "valueId": "code"
            }, {
              "valueString": "http://hl7.org/fhir/uv/omop/ConceptMap/AllergySubstanceType"
            }, {
              "valueString": "code"
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            "transform": "translate"
          }, {
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            "element": "value_source_value",
            "parameter": [ {
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      } ],
      "target": [ {
        "parameter": [ {
          "valueId": "tgt"
        } ],
        "transform": "copy"
      } ]
    }, {
      "name": "recordedDateDateTime",
      "source": [ {
        "type": "dateTime",
        "context": "src",
        "element": "recordedDate",
        "variable": "osd"
      } ],
      "target": [ {
        "context": "tgt",
        "element": "observation_date",
        "parameter": [ {
          "valueString": "src.recordedDate.toString().substring(0, 10)"
        } ],
        "transform": "evaluate"
      }, {
        "context": "tgt",
        "element": "observation_datetime",
        "parameter": [ {
          "valueId": "osd"
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        "transform": "copy"
      } ]
    } ],
    "input": [ {
      "mode": "source",
      "name": "src",
      "type": "Allergy"
    }, {
      "mode": "target",
      "name": "tgt",
      "type": "ObservationTable"
    } ]
  } ],
  "publisher": "HL7 International / Biomedical Research and Regulation",
  "jurisdiction": [ {
    "coding": [ {
      "code": "001",
      "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
      "display": "World"
    } ]
  } ],
  "name": "AllergyMap",
  "type": null,
  "experimental": null,
  "resourceType": "StructureMap",
  "title": "Mapping Allergy resource to Observation OMOP Domain",
  "package_version": "1.0.0",
  "extension": [ {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
    "valueCode": "brr"
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    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
    "valueInteger": 2,
    "_valueInteger": {
      "extension": [ {
        "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
        "valueCanonical": "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
      } ]
    }
  }, {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
    "valueCode": "informative",
    "_valueCode": {
      "extension": [ {
        "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
        "valueCanonical": "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
      } ]
    }
  } ],
  "structure": [ {
    "url": "http://hl7.org/fhir/StructureDefinition/AllergyIntolerance",
    "mode": "source",
    "alias": "Allergy"
  }, {
    "url": "http://hl7.org/fhir/uv/omop/StructureDefinition/Observation",
    "mode": "target",
    "alias": "ObservationTable"
  } ],
  "status": "draft",
  "id": "bcc77123-acf5-4188-a868-3df53cd0d80e",
  "kind": null,
  "url": "http://hl7.org/fhir/uv/omop/StructureMap/AllergyMap",
  "version": "1.0.0",
  "contact": [ {
    "name": "HL7 International / Biomedical Research and Regulation",
    "telecom": [ {
      "value": "http://www.hl7.org/Special/committees/rcrim",
      "system": "url"
    } ]
  } ]
}