description: Observation-related profiles
package_name: hl7.fhir.uv.genomics
derivation: constraint
name: RegionStudied
type: Observation
elements:
  code:
    short: Region Studied
    type: CodeableConcept
    mustSupport: false
    pattern:
      type: CodeableConcept
      value:
        coding:
        - {code: 53041-0, system: 'http://loinc.org'}
    index: 0
  valueCodeableConcept: {type: CodeableConcept, mustSupport: false, index: 1}
  component:
    mustSupport: false
    index: 2
    slicing:
      rules: open
      discriminator:
      - {path: code, type: pattern}
      min: null
      slices:
        gene-studied:
          match:
            code:
              coding:
              - {code: 48018-6, system: 'http://loinc.org'}
          schema:
            short: Gene studied ID
            mustSupport: false
            array: true
            index: 3
            elements:
              code:
                type: CodeableConcept
                mustSupport: false
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 48018-6, system: 'http://loinc.org'}
                index: 4
              value:
                mustSupport: false
                choices: [valueCodeableConcept]
                index: 6
              valueCodeableConcept: {type: CodeableConcept, mustSupport: false, choiceOf: value, index: 7}
            required: [value, valueCodeableConcept, code]
        gene-mutations:
          match:
            code:
              coding:
              - {code: 36908-2, system: 'http://loinc.org'}
          schema:
            short: Gene Mutations ID
            mustSupport: false
            array: true
            index: 8
            elements:
              code:
                type: CodeableConcept
                mustSupport: false
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 36908-2, system: 'http://loinc.org'}
                index: 9
              value:
                mustSupport: false
                choices: [valueCodeableConcept]
                index: 11
              valueCodeableConcept: {type: CodeableConcept, mustSupport: false, choiceOf: value, index: 12}
            required: [value, valueCodeableConcept, code]
        region-description:
          match:
            code:
              coding:
              - {code: 81293-3, system: 'http://loinc.org'}
          schema:
            short: Region Description
            mustSupport: false
            array: true
            index: 13
            elements:
              code:
                type: CodeableConcept
                mustSupport: false
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 81293-3, system: 'http://loinc.org'}
                index: 14
              value:
                mustSupport: false
                choices: [valueString]
                index: 16
              valueString: {type: string, mustSupport: false, choiceOf: value, index: 17}
            required: [valueString, value, code]
        region-coverage:
          match:
            code:
              coding:
              - {code: region-coverage, system: 'http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes'}
          schema:
            short: Region Coverage
            mustSupport: false
            index: 18
            elements:
              code:
                type: CodeableConcept
                mustSupport: false
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: region-coverage, system: 'http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes'}
                index: 19
              value:
                mustSupport: false
                choices: [valueQuantity]
                index: 21
              valueQuantity: {type: Quantity, mustSupport: false, choiceOf: value, index: 22}
            required: [value, valueQuantity, code]
        ranges-examined:
          match:
            code:
              coding:
              - {code: 51959-5, system: 'http://loinc.org'}
          schema:
            short: Range(s) of DNA sequence examined
            mustSupport: false
            array: true
            index: 23
            elements:
              code:
                type: CodeableConcept
                mustSupport: false
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 51959-5, system: 'http://loinc.org'}
                index: 24
              value:
                mustSupport: false
                choices: [valueRange]
                index: 26
              valueRange: {type: Range, mustSupport: false, choiceOf: value, index: 27}
            required: [valueRange, value, code]
        coordinate-system:
          match:
            code:
              coding:
              - {code: 92822-6, system: 'http://loinc.org'}
          schema:
            short: Coordinate System
            mustSupport: false
            index: 28
            elements:
              code:
                type: CodeableConcept
                mustSupport: false
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 92822-6, system: 'http://loinc.org'}
                index: 29
              value:
                short: 0-based interval | 0-based character | 1-based character
                mustSupport: false
                choices: [valueCodeableConcept]
                index: 31
              valueCodeableConcept: {type: CodeableConcept, short: 0-based interval | 0-based character | 1-based character, mustSupport: false, choiceOf: value, index: 32}
            required: [value, valueCodeableConcept, code]
        genomic-ref-seq:
          match:
            code:
              coding:
              - {code: 48013-7, system: 'http://loinc.org'}
          schema:
            short: Genomic reference sequence ID
            mustSupport: false
            index: 33
            elements:
              code:
                type: CodeableConcept
                mustSupport: false
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 48013-7, system: 'http://loinc.org'}
                index: 34
              value:
                mustSupport: false
                choices: [valueCodeableConcept]
                index: 36
              valueCodeableConcept: {type: CodeableConcept, mustSupport: false, choiceOf: value, index: 37}
            required: [value, valueCodeableConcept, code]
package_version: reporting-1.0.0
class: profile
kind: resource
url: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/region-studied
base: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-base
version: 1.0.0
required: [code]