description: RNA Seq
package_name: de.medizininformatikinitiative.kerndatensatz.mtb
derivation: constraint
name: MII_PR_MTB_RNA_Seq
type: Observation
elements:
  meta: {mustSupport: true, index: 0}
  component:
    array: true
    min: 2
    index: 1
    slicing:
      slices:
        gene-studied:
          match: {}
          schema: {short: Gen, index: 2}
        variation-code:
          match: {}
          schema: {short: Entrez ID & Ensemble ID, array: true, min: 2, max: 2, index: 3}
          min: 2
          _required: true
          max: 2
        transcript-id:
          match: {}
          schema:
            short: Transcript ID
            mustSupport: true
            index: 4
            elements:
              value:
                choices: [valueCodeableConcept]
                index: 6
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 7}
        transcripts-per-million:
          match: {}
          schema:
            short: Transcripts per million
            mustSupport: true
            index: 8
            elements:
              value:
                choices: [valueRatio]
                index: 10
              valueRatio: {type: Ratio, choiceOf: value, index: 11}
              value[x]:
                elements:
                  denominator:
                    elements:
                      value:
                        pattern: {type: Decimal, value: 1000000}
                        index: 12
        tissue-corrected-expression:
          match: {}
          schema:
            short: Tissue corrected expression
            mustSupport: true
            index: 13
            elements:
              value:
                choices: [valueBoolean]
                index: 15
              valueBoolean: {type: boolean, choiceOf: value, index: 16}
        raw-counts:
          match: {}
          schema:
            short: Raw counts
            mustSupport: true
            index: 17
            elements:
              value:
                choices: [valueQuantity]
                index: 19
              valueQuantity: {type: Quantity, choiceOf: value, index: 20}
        library-size:
          match: {}
          schema:
            short: Library size
            mustSupport: true
            index: 21
            elements:
              value:
                choices: [valueQuantity]
                index: 23
              valueQuantity: {type: Quantity, choiceOf: value, index: 24}
        cohort-ranking:
          match: {}
          schema:
            short: Cohort ranking
            mustSupport: true
            index: 25
            elements:
              value:
                choices: [valueQuantity]
                index: 27
              valueQuantity: {type: Quantity, choiceOf: value, index: 28}
package_version: 2025.0.0-ballot-alpha.1
class: profile
kind: resource
url: https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-rna-seq
base: https://www.medizininformatik-initiative.de/fhir/ext/modul-molgen/StructureDefinition/variante
version: 2024.0.0-ballot