description: Indicates whether two entities are in Cis (same strand) or Trans (opposite strand) relationship to each other.
package_name: hl7.fhir.uv.genomics
derivation: constraint
name: SequencePhaseRelationship
type: Observation
elements:
  code:
    short: 82120-7
    pattern:
      type: CodeableConcept
      value:
        coding:
        - {code: 82120-7, system: 'http://loinc.org'}
    index: 0
  value:
    short: Cis | Trans | Indeterminate | Unknown
    choices: [valueCodeableConcept]
    index: 2
  valueCodeableConcept: {type: CodeableConcept, short: Cis | Trans | Indeterminate | Unknown, choiceOf: value, index: 3}
  method:
    short: Directly measured | Family DNA | Family history | Inferred from population data
    binding: {strength: extensible, valueSet: 'http://loinc.org/vs/LL4050-2'}
    index: 4
  derivedFrom:
    index: 5
    slicing:
      rules: open
      description: Slice based on the profile
      discriminator:
      - {path: resolve(), type: profile}
      min: null
      slices:
        variant:
          match: {}
          schema:
            type: Reference
            short: Variant in the relationship
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant']
            array: true
            index: 6
          min: 0
        haplotype:
          match: {}
          schema:
            type: Reference
            short: Haplotype in the relationship
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype']
            array: true
            index: 7
          min: 0
package_version: reporting-2.0.0
class: profile
kind: resource
url: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/sequence-phase-relationship
base: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/finding
version: 2.0.0
required: [value, valueCodeableConcept]