description: The area of the genome region referenced in testing for variants.
package_name: hl7.fhir.us.mcode
derivation: constraint
name: GenomicRegionStudied
type: Observation
elements:
  code:
    pattern:
      type: CodeableConcept
      value:
        coding:
        - {code: 53041-0, system: 'http://loinc.org'}
    index: 0
  value:
    choices: []
    index: 2
  component:
    index: 3
    slicing:
      rules: open
      description: Slice based on the component.code pattern
      discriminator:
      - {path: code, type: pattern}
      min: null
      slices:
        GeneMutations:
          match:
            code:
              coding:
              - {code: 36908-2, system: 'http://loinc.org'}
          schema:
            short: Gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal
            mustSupport: true
            index: 4
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 36908-2, system: 'http://loinc.org'}
                index: 5
              value:
                choices: [valueCodeableConcept]
                index: 7
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 8}
            required: [value, valueCodeableConcept]
        GeneStudied:
          match:
            code:
              coding:
              - {code: 48018-6, system: 'http://loinc.org'}
          schema:
            short: Gene studied [ID]
            mustSupport: true
            index: 10
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 48018-6, system: 'http://loinc.org'}
                index: 11
              value:
                choices: [valueCodeableConcept]
                index: 13
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 14}
            required: [value, valueCodeableConcept]
        DNARegionDescription:
          match:
            code:
              coding:
              - {code: 81293-3, system: 'http://loinc.org'}
          schema:
            short: Description of ranges of DNA sequences examined
            mustSupport: true
            index: 16
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 81293-3, system: 'http://loinc.org'}
                index: 17
              value:
                choices: [valueString]
                index: 19
              valueString: {type: string, choiceOf: value, index: 20}
            required: [valueString, value]
        DNARangesExamined:
          match:
            code:
              coding:
              - {code: 51959-5, system: 'http://loinc.org'}
          schema:
            short: Range(s) of DNA sequence examined
            mustSupport: true
            index: 22
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 51959-5, system: 'http://loinc.org'}
                index: 23
              value:
                choices: [valueRange]
                index: 25
              valueRange: {type: Range, choiceOf: value, index: 26}
            required: [valueRange, value]
        GenomicRegionCoordinateSystem:
          match:
            code:
              coding:
              - {code: 92822-6, system: 'http://loinc.org'}
          schema:
            short: Genomic coordinate system [Type].
            mustSupport: true
            index: 28
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 92822-6, system: 'http://loinc.org'}
                index: 29
              value:
                choices: [valueCodeableConcept]
                index: 31
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 32}
            required: [value, valueCodeableConcept]
        GenomicReferenceSequenceId:
          match:
            code:
              coding:
              - {code: 48013-7, system: 'http://loinc.org'}
          schema:
            short: Genomic reference sequence [ID]
            mustSupport: true
            index: 34
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 48013-7, system: 'http://loinc.org'}
                index: 35
              value:
                choices: []
                index: 37
            required: [value]
package_version: 1.0.0
class: profile
kind: resource
url: http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomic-region-studied
base: http://hl7.org/fhir/us/core/StructureDefinition/us-core-observation-lab
version: 1.0.0