description: Genomic profile of DiagnosticReport.
package_name: hl7.fhir.uv.genomics-reporting
derivation: constraint
name: GenomicReport
type: DiagnosticReport
elements:
  extension:
    index: 0
    slicing:
      rules: open
      ordered: false
      discriminator:
      - {path: url, type: value}
      min: null
      slices:
        recommended-action:
          match: {url: null}
          schema: {type: Extension, url: 'http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action', index: 1}
          min: 0
        genomic-risk-assessment:
          match: {url: null}
          schema: {type: Extension, url: 'http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-risk-assessment', index: 2}
          min: 0
        coded-note:
          match: {url: null}
          schema: {short: Comments about the report that also contain a coded type, type: Extension, url: 'http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report-note', index: 3}
          min: 0
        supporting-info:
          match: {url: null}
          schema: {type: Extension, url: 'http://hl7.org/fhir/StructureDefinition/workflow-supportingInfo', index: 4}
          min: 0
        genomic-study:
          match: {url: null}
          schema: {type: Extension, short: Reference to full details of an genomic study associated with the diagnostic report, url: 'http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-reference', index: 5}
          min: 0
        hla-genotyping-results-allele-database:
          match: {url: null}
          schema: {type: Extension, url: 'http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-allele-database', index: 6}
          min: 0
          max: 1
        hla-genotyping-results-glstring:
          match: {url: null}
          schema: {type: Extension, url: 'http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-glstring', index: 7}
          min: 0
          max: 1
        workflow-relatedArtifact:
          match: {url: null}
          schema: {type: Extension, url: 'http://hl7.org/fhir/StructureDefinition/workflow-relatedArtifact', index: 8}
          min: 0
  category:
    index: 9
    slicing:
      rules: open
      description: Slice based on the category code pattern
      discriminator:
      - {path: coding, type: pattern}
      min: 1
      slices:
        Genetics:
          match:
            coding: {code: GE, system: 'http://terminology.hl7.org/CodeSystem/v2-0074'}
          schema:
            _required: true
            index: 10
            elements:
              coding:
                pattern:
                  type: Coding
                  value: {code: GE, system: 'http://terminology.hl7.org/CodeSystem/v2-0074'}
                index: 11
            required: [coding]
  code:
    pattern:
      type: CodeableConcept
      value:
        coding:
        - {code: 51969-4, system: 'http://loinc.org'}
    index: 12
  effective:
    choices: [effectiveDateTime]
    index: 14
  effectiveDateTime: {type: dateTime, choiceOf: effective, index: 15}
  result:
    index: 16
    slicing:
      rules: open
      description: Slice based on the reference profile and code pattern
      discriminator:
      - {path: resolve(), type: profile}
      min: null
      slices:
        overall:
          match: {}
          schema:
            type: Reference
            short: Assessment of overall results
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/overall-interpretation']
            index: 17
          min: 0
          max: 1
        therapeutic-implication:
          match: {}
          schema:
            type: Reference
            short: Therapeutic Implication
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication']
            array: true
            index: 19
          min: 0
        molecular-consequence:
          match: {}
          schema:
            type: Reference
            short: Molecular Consequence
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence']
            array: true
            index: 20
          min: 0
        sequence-phase-relation:
          match: {}
          schema:
            type: Reference
            short: Sequence Phase Relationship
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/sequence-phase-relationship']
            array: true
            index: 22
          min: 0
        variant:
          match: {}
          schema:
            type: Reference
            short: Variant
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant']
            array: true
            index: 21
          min: 0
        biomarker:
          match: {}
          schema:
            type: Reference
            short: MolecularBiomarker
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-biomarker']
            array: true
            index: 25
          min: 0
        haplotype:
          match: {}
          schema:
            type: Reference
            short: Haplotype
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype']
            array: true
            index: 24
          min: 0
        genotype:
          match: {}
          schema:
            type: Reference
            short: Genotype
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype']
            array: true
            index: 23
          min: 0
        diagnostic-implication:
          match: {}
          schema:
            type: Reference
            short: Diagnostic Implication
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication']
            array: true
            index: 18
          min: 0
package_version: 3.0.0-ballot
extensions:
  recommended-action: {url: 'http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action', min: 0, type: Extension, index: 1}
  genomic-risk-assessment: {url: 'http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-risk-assessment', min: 0, type: Extension, index: 2}
  coded-note: {url: 'http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report-note', min: 0, short: Comments about the report that also contain a coded type, type: Extension, index: 3}
  supporting-info: {url: 'http://hl7.org/fhir/StructureDefinition/workflow-supportingInfo', min: 0, type: Extension, index: 4}
  genomic-study: {url: 'http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-reference', min: 0, type: Extension, short: Reference to full details of an genomic study associated with the diagnostic report, index: 5}
  hla-genotyping-results-allele-database: {url: 'http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-allele-database', min: 0, max: 1, type: Extension, index: 6}
  hla-genotyping-results-glstring: {url: 'http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-glstring', min: 0, max: 1, type: Extension, index: 7}
  workflow-relatedArtifact: {url: 'http://hl7.org/fhir/StructureDefinition/workflow-relatedArtifact', min: 0, type: Extension, index: 8}
class: profile
kind: resource
url: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report
base: http://hl7.org/fhir/StructureDefinition/DiagnosticReport
version: 3.0.0-ballot
required: [category]