description: Genomic analysis summary report. The report may include one or more tests, with two distinct test types. The first type is a targeted mutation test, where a specific mutation on a specific gene is tested for. The result is either positive or negative for that mutation. The second type is a more general test for variants. This type of test returns the identity of variants found in a certain region of the genome.
package_name: hl7.fhir.us.mcode
derivation: constraint
name: GenomicsReport
type: DiagnosticReport
elements:
  category:
    mustSupport: true
    index: 1
    slicing:
      slices:
        Genetics:
          match: {}
          schema:
            index: 2
            elements:
              coding: {index: 3}
  specimen:
    type: Reference
    mustSupport: true
    refers: ['http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-human-specimen']
    index: 11
  effectiveDateTime: {mustSupport: true, index: 8}
  status: {mustSupport: true, index: 0}
  result:
    mustSupport: true
    index: 12
    slicing:
      slices:
        variant:
          match: {}
          schema:
            type: Reference
            mustSupport: true
            refers: ['http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomic-variant']
            index: 13
        region-studied:
          match: {}
          schema:
            type: Reference
            mustSupport: true
            refers: ['http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomic-region-studied']
            index: 14
  effective:
    mustSupport: true
    choices: []
    index: 7
  code: {mustSupport: true, index: 4}
  issued: {mustSupport: true, index: 9}
  subject:
    type: Reference
    mustSupport: true
    refers: ['http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-cancer-patient']
    index: 5
  performer: {mustSupport: true, index: 10}
package_version: 3.0.0-ballot
class: profile
kind: resource
url: http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomics-report
base: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report
version: 3.0.0-ballot