{
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}, {
"code": "Identifier"
}, {
"code": "Money"
}, {
"code": "Period"
}, {
"code": "Quantity"
}, {
"code": "Range"
}, {
"code": "Ratio"
}, {
"code": "Reference"
}, {
"code": "SampledData"
}, {
"code": "Signature"
}, {
"code": "Timing"
}, {
"code": "ContactDetail"
}, {
"code": "Contributor"
}, {
"code": "DataRequirement"
}, {
"code": "Expression"
}, {
"code": "ParameterDefinition"
}, {
"code": "RelatedArtifact"
}, {
"code": "TriggerDefinition"
}, {
"code": "UsageContext"
}, {
"code": "Dosage"
}, {
"code": "Meta"
} ],
"max": "0",
"id": "Extension.value[x]",
"base": {
"max": "1",
"min": 0,
"path": "Extension.value[x]"
},
"isSummary": false
} ]
},
"status": "active",
"id": "b86e4d20-78e0-4346-b6e6-ed7017939d14",
"kind": "complex-type",
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-metrics",
"context": [ {
"type": "element",
"expression": "Procedure"
} ],
"version": "3.0.0",
"differential": {
"element": [ {
"id": "Extension",
"path": "Extension",
"short": "Genomic Study Analysis Metrics",
"definition": "Metrics about the sequencing analysis that was performed"
}, {
"id": "Extension.extension:read-depth",
"max": "1",
"min": 0,
"path": "Extension.extension",
"short": "Read Depth",
"sliceName": "read-depth",
"definition": "The average read depth (number of reads for a position) for the sequencing test",
"requirements": "This value is typically represented with an 'x' after the number (30x). Simply share the quantity here."
}, {
"id": "Extension.extension:read-depth.extension",
"max": "0",
"path": "Extension.extension.extension"
}, {
"id": "Extension.extension:read-depth.url",
"path": "Extension.extension.url",
"fixedUri": "read-depth"
}, {
"id": "Extension.extension:read-depth.value[x]",
"path": "Extension.extension.value[x]",
"type": [ {
"code": "Quantity",
"profile": [ "http://hl7.org/fhir/StructureDefinition/SimpleQuantity" ]
} ],
"short": "30, 100"
}, {
"id": "Extension.extension:sequencing-coverage",
"max": "1",
"min": 0,
"path": "Extension.extension",
"short": "Sequencing Coverage",
"sliceName": "sequencing-coverage",
"definition": "The percentage of the studied regions that were sequenced",
"requirements": "This value is typically represented with an '%' after the number (95%). Simply share the quantity here."
}, {
"id": "Extension.extension:sequencing-coverage.extension",
"max": "0",
"path": "Extension.extension.extension"
}, {
"id": "Extension.extension:sequencing-coverage.url",
"path": "Extension.extension.url",
"fixedUri": "sequencing-coverage"
}, {
"id": "Extension.extension:sequencing-coverage.value[x]",
"path": "Extension.extension.value[x]",
"type": [ {
"code": "Quantity",
"profile": [ "http://hl7.org/fhir/StructureDefinition/SimpleQuantity" ]
} ],
"short": "95, 100"
}, {
"id": "Extension.extension:metrics-description",
"max": "1",
"min": 0,
"path": "Extension.extension",
"short": "Metrics Description",
"sliceName": "metrics-description",
"definition": "Freetext description of the coverage metrics for the sequencing test"
}, {
"id": "Extension.extension:metrics-description.extension",
"max": "0",
"path": "Extension.extension.extension"
}, {
"id": "Extension.extension:metrics-description.url",
"path": "Extension.extension.url",
"fixedUri": "metrics-description"
}, {
"id": "Extension.extension:metrics-description.value[x]",
"path": "Extension.extension.value[x]",
"type": [ {
"code": "string"
} ]
}, {
"id": "Extension.url",
"path": "Extension.url",
"fixedUri": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-metrics"
}, {
"id": "Extension.value[x]",
"max": "0",
"path": "Extension.value[x]"
} ]
},
"contact": [ {
"name": "HL7 International / Clinical Genomics",
"telecom": [ {
"value": "http://www.hl7.org/Special/committees/clingenomics",
"system": "url"
}, {
"value": "cg@lists.HL7.org",
"system": "email"
} ]
} ],
"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension"
}