{
  "description": "The specimen domain contains the records identifying biological samples from a person.",
  "_filename": "StructureDefinition-Specimen.json",
  "package_name": "hl7.fhir.uv.omop",
  "date": "2025-07-29T21:03:04+00:00",
  "derivation": "specialization",
  "publisher": "HL7 International / Biomedical Research and Regulation",
  "fhirVersion": "5.0.0",
  "jurisdiction": [ {
    "coding": [ {
      "code": "001",
      "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
      "display": "World"
    } ]
  } ],
  "name": "Specimen",
  "mapping": [ {
    "uri": "http://hl7.org/v3",
    "name": "RIM Mapping",
    "identity": "rim"
  } ],
  "abstract": false,
  "type": "http://hl7.org/fhir/uv/omop/StructureDefinition/Specimen",
  "experimental": null,
  "resourceType": "StructureDefinition",
  "title": "Specimen OMOP Table",
  "package_version": "1.0.0-ballot",
  "extension": [ {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-type-characteristics",
    "valueCode": "can-be-target"
  }, {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
    "valueCode": "brr"
  }, {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
    "valueInteger": 1,
    "_valueInteger": {
      "extension": [ {
        "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
        "valueCanonical": "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
      } ]
    }
  }, {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
    "valueCode": "informative",
    "_valueCode": {
      "extension": [ {
        "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
        "valueCanonical": "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
      } ]
    }
  } ],
  "snapshot": {
    "element": [ {
      "path": "Specimen",
      "min": 0,
      "definition": "The specimen domain contains the records identifying biological samples from a person.",
      "isModifier": false,
      "short": "Specimen OMOP Table",
      "mapping": [ {
        "map": "n/a",
        "identity": "rim"
      } ],
      "max": "*",
      "id": "Specimen",
      "base": {
        "max": "*",
        "min": 0,
        "path": "Base"
      }
    }, {
      "id": "Specimen.specimen-id",
      "max": "1",
      "min": 1,
      "base": {
        "max": "1",
        "min": 1,
        "path": "Specimen.specimen_id"
      },
      "path": "Specimen.specimen_id",
      "type": [ {
        "code": "code"
      } ],
      "short": "Specimen Identifier",
      "definition": "Specimen Identifier"
    }, {
      "id": "Specimen.person-id",
      "max": "1",
      "min": 1,
      "base": {
        "max": "1",
        "min": 1,
        "path": "Specimen.person_id"
      },
      "path": "Specimen.person_id",
      "type": [ {
        "code": "Reference",
        "targetProfile": [ "http://hl7.org/fhir/uv/omop/StructureDefinition/Person" ]
      } ],
      "short": "Person",
      "definition": "The person from whom the specimen is collected."
    }, {
      "id": "Specimen.specimen-concept-id",
      "max": "1",
      "min": 1,
      "base": {
        "max": "1",
        "min": 1,
        "path": "Specimen.specimen_concept_id"
      },
      "path": "Specimen.specimen_concept_id",
      "type": [ {
        "code": "code"
      } ],
      "short": "Specimen",
      "definition": "Specimen"
    }, {
      "id": "Specimen.specimen-type-concept-id",
      "max": "1",
      "min": 1,
      "base": {
        "max": "1",
        "min": 1,
        "path": "Specimen.specimen_type_concept_id"
      },
      "path": "Specimen.specimen_type_concept_id",
      "type": [ {
        "code": "code"
      } ],
      "short": "Specimen Type",
      "definition": "Specimen Type"
    }, {
      "id": "Specimen.specimen-date",
      "max": "1",
      "min": 1,
      "base": {
        "max": "1",
        "min": 1,
        "path": "Specimen.specimen_date"
      },
      "path": "Specimen.specimen_date",
      "type": [ {
        "code": "date"
      } ],
      "short": "Specimen Date",
      "definition": "The date the specimen was collected."
    }, {
      "id": "Specimen.specimen-datetime",
      "max": "1",
      "min": 0,
      "base": {
        "max": "1",
        "min": 0,
        "path": "Specimen.specimen_datetime"
      },
      "path": "Specimen.specimen_datetime",
      "type": [ {
        "code": "dateTime"
      } ],
      "short": "Specimen Datetime",
      "definition": "Specimen Datetime"
    }, {
      "id": "Specimen.quantity",
      "max": "1",
      "min": 0,
      "base": {
        "max": "1",
        "min": 0,
        "path": "Specimen.quantity"
      },
      "path": "Specimen.quantity",
      "type": [ {
        "code": "integer"
      } ],
      "short": "Quantity",
      "definition": "The amount of specimen collected from the person."
    }, {
      "id": "Specimen.unit-concept-id",
      "max": "1",
      "min": 0,
      "base": {
        "max": "1",
        "min": 0,
        "path": "Specimen.unit_concept_id"
      },
      "path": "Specimen.unit_concept_id",
      "type": [ {
        "code": "code"
      } ],
      "short": "Unit",
      "definition": "The unit for the quantity of the specimen."
    }, {
      "id": "Specimen.anatomic-site-concept-id",
      "max": "1",
      "min": 0,
      "base": {
        "max": "1",
        "min": 0,
        "path": "Specimen.anatomic_site_concept_id"
      },
      "path": "Specimen.anatomic_site_concept_id",
      "type": [ {
        "code": "code"
      } ],
      "short": "Anatomic Site",
      "definition": "This is the site on the body where the specimen is from."
    }, {
      "id": "Specimen.disease-status-concept-id",
      "max": "1",
      "min": 0,
      "base": {
        "max": "1",
        "min": 0,
        "path": "Specimen.disease_status_concept_id"
      },
      "path": "Specimen.disease_status_concept_id",
      "type": [ {
        "code": "code"
      } ],
      "short": "Disease Status",
      "definition": "Disease Status"
    }, {
      "id": "Specimen.specimen-source-id",
      "max": "1",
      "min": 0,
      "base": {
        "max": "1",
        "min": 0,
        "path": "Specimen.specimen_source_id"
      },
      "path": "Specimen.specimen_source_id",
      "type": [ {
        "code": "string"
      } ],
      "short": "Specimen Source",
      "definition": "This is the identifier for the specimen from the source system."
    }, {
      "id": "Specimen.specimen-source-value",
      "max": "1",
      "min": 0,
      "base": {
        "max": "1",
        "min": 0,
        "path": "Specimen.specimen_source_value"
      },
      "path": "Specimen.specimen_source_value",
      "type": [ {
        "code": "string"
      } ],
      "short": "Specimen Source Value",
      "definition": "Specimen Source Value"
    }, {
      "id": "Specimen.unit-source-value",
      "max": "1",
      "min": 0,
      "base": {
        "max": "1",
        "min": 0,
        "path": "Specimen.unit_source_value"
      },
      "path": "Specimen.unit_source_value",
      "type": [ {
        "code": "string"
      } ],
      "short": "Unit Source Value",
      "definition": "Unit Source Value"
    }, {
      "id": "Specimen.anatomic-site-source-value",
      "max": "1",
      "min": 0,
      "base": {
        "max": "1",
        "min": 0,
        "path": "Specimen.anatomic_site_source_value"
      },
      "path": "Specimen.anatomic_site_source_value",
      "type": [ {
        "code": "string"
      } ],
      "short": "Anatomic Site Source Value",
      "definition": "Anatomic Site Source Value"
    }, {
      "id": "Specimen.disease-status-source-value",
      "max": "1",
      "min": 0,
      "base": {
        "max": "1",
        "min": 0,
        "path": "Specimen.disease_status_source_value"
      },
      "path": "Specimen.disease_status_source_value",
      "type": [ {
        "code": "string"
      } ],
      "short": "Disease Site Source Value",
      "definition": "Disease Site Source Value"
    } ],
    "extension": [ {
      "url": "http://hl7.org/fhir/tools/StructureDefinition/snapshot-base-version",
      "valueString": "5.0.0"
    } ]
  },
  "status": "active",
  "id": "afd737d8-829b-4839-8456-616b0da9bceb",
  "kind": "logical",
  "url": "http://hl7.org/fhir/uv/omop/StructureDefinition/Specimen",
  "version": "1.0.0-ballot",
  "differential": {
    "element": [ {
      "id": "Specimen",
      "path": "Specimen",
      "short": "Specimen OMOP Table",
      "definition": "The specimen domain contains the records identifying biological samples from a person."
    }, {
      "id": "Specimen.specimen-id",
      "max": "1",
      "min": 1,
      "path": "Specimen.specimen_id",
      "type": [ {
        "code": "code"
      } ],
      "short": "Specimen Identifier",
      "definition": "Specimen Identifier"
    }, {
      "id": "Specimen.person-id",
      "max": "1",
      "min": 1,
      "path": "Specimen.person_id",
      "type": [ {
        "code": "Reference",
        "targetProfile": [ "http://hl7.org/fhir/uv/omop/StructureDefinition/Person" ]
      } ],
      "short": "Person",
      "definition": "The person from whom the specimen is collected."
    }, {
      "id": "Specimen.specimen-concept-id",
      "max": "1",
      "min": 1,
      "path": "Specimen.specimen_concept_id",
      "type": [ {
        "code": "code"
      } ],
      "short": "Specimen",
      "definition": "Specimen"
    }, {
      "id": "Specimen.specimen-type-concept-id",
      "max": "1",
      "min": 1,
      "path": "Specimen.specimen_type_concept_id",
      "type": [ {
        "code": "code"
      } ],
      "short": "Specimen Type",
      "definition": "Specimen Type"
    }, {
      "id": "Specimen.specimen-date",
      "max": "1",
      "min": 1,
      "path": "Specimen.specimen_date",
      "type": [ {
        "code": "date"
      } ],
      "short": "Specimen Date",
      "definition": "The date the specimen was collected."
    }, {
      "id": "Specimen.specimen-datetime",
      "max": "1",
      "min": 0,
      "path": "Specimen.specimen_datetime",
      "type": [ {
        "code": "dateTime"
      } ],
      "short": "Specimen Datetime",
      "definition": "Specimen Datetime"
    }, {
      "id": "Specimen.quantity",
      "max": "1",
      "min": 0,
      "path": "Specimen.quantity",
      "type": [ {
        "code": "integer"
      } ],
      "short": "Quantity",
      "definition": "The amount of specimen collected from the person."
    }, {
      "id": "Specimen.unit-concept-id",
      "max": "1",
      "min": 0,
      "path": "Specimen.unit_concept_id",
      "type": [ {
        "code": "code"
      } ],
      "short": "Unit",
      "definition": "The unit for the quantity of the specimen."
    }, {
      "id": "Specimen.anatomic-site-concept-id",
      "max": "1",
      "min": 0,
      "path": "Specimen.anatomic_site_concept_id",
      "type": [ {
        "code": "code"
      } ],
      "short": "Anatomic Site",
      "definition": "This is the site on the body where the specimen is from."
    }, {
      "id": "Specimen.disease-status-concept-id",
      "max": "1",
      "min": 0,
      "path": "Specimen.disease_status_concept_id",
      "type": [ {
        "code": "code"
      } ],
      "short": "Disease Status",
      "definition": "Disease Status"
    }, {
      "id": "Specimen.specimen-source-id",
      "max": "1",
      "min": 0,
      "path": "Specimen.specimen_source_id",
      "type": [ {
        "code": "string"
      } ],
      "short": "Specimen Source",
      "definition": "This is the identifier for the specimen from the source system."
    }, {
      "id": "Specimen.specimen-source-value",
      "max": "1",
      "min": 0,
      "path": "Specimen.specimen_source_value",
      "type": [ {
        "code": "string"
      } ],
      "short": "Specimen Source Value",
      "definition": "Specimen Source Value"
    }, {
      "id": "Specimen.unit-source-value",
      "max": "1",
      "min": 0,
      "path": "Specimen.unit_source_value",
      "type": [ {
        "code": "string"
      } ],
      "short": "Unit Source Value",
      "definition": "Unit Source Value"
    }, {
      "id": "Specimen.anatomic-site-source-value",
      "max": "1",
      "min": 0,
      "path": "Specimen.anatomic_site_source_value",
      "type": [ {
        "code": "string"
      } ],
      "short": "Anatomic Site Source Value",
      "definition": "Anatomic Site Source Value"
    }, {
      "id": "Specimen.disease-status-source-value",
      "max": "1",
      "min": 0,
      "path": "Specimen.disease_status_source_value",
      "type": [ {
        "code": "string"
      } ],
      "short": "Disease Site Source Value",
      "definition": "Disease Site Source Value"
    } ]
  },
  "contact": [ {
    "name": "HL7 International / Biomedical Research and Regulation",
    "telecom": [ {
      "value": "http://www.hl7.org/Special/committees/rcrim",
      "system": "url"
    } ]
  } ],
  "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Base"
}