description: Root DiagnosticReport profile
package_name: hl7.fhir.uv.genomics
derivation: constraint
name: Genomics Report
type: DiagnosticReport
elements:
  category:
    type: CodeableConcept
    isModifier: false
    mustSupport: true
    pattern:
      type: CodeableConcept
      value:
        coding:
        - {code: GE, system: 'http://terminology.hl7.org/CodeSystem/v2-0074'}
    index: 10
  specimen:
    type: Reference
    isModifier: false
    mustSupport: true
    refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/specimen']
    array: true
    index: 20
  extension:
    isModifier: false
    short: Citations and supporting info
    type: Extension
    mustSupport: true
    url: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/dr-relatedArtifact
    index: 0
    slicing:
      slices:
        related-artifact:
          match: {}
          schema: {isModifier: false, short: Citations and supporting info, type: Extension, mustSupport: true, url: 'http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/dr-relatedArtifact', index: 0}
          min: 0
          max: 1
        recommended-action:
          match: {}
          schema:
            isModifier: false
            short: Tasks relevant to report
            type: Extension
            mustSupport: true
            url: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/dr-recommendedAction
            index: 1
            elements:
              valueReference:
                isModifier: false
                short: Recommended action tasks relevant to report
                refers: ['http://hl7.org/fhir/StructureDefinition/Task']
                type: Reference
                mustSupport: true
                index: 2
            required: [valueReference]
        supportingInfo:
          match: {}
          schema:
            isModifier: false
            short: Other resources that support report
            type: Extension
            mustSupport: true
            url: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/dr-supportingInfo
            index: 3
            elements:
              valueReference:
                isModifier: false
                short: Family history with relevance to report
                refers: ['http://hl7.org/fhir/StructureDefinition/DocumentReference', 'http://hl7.org/fhir/StructureDefinition/FamilyMemberHistory', 'http://hl7.org/fhir/StructureDefinition/Observation', 'http://hl7.org/fhir/StructureDefinition/RiskAssessment']
                type: Reference
                mustSupport: true
                index: 4
            required: [valueReference]
        risk:
          match: {}
          schema:
            type: Extension
            isModifier: false
            mustSupport: true
            url: http://hl7.org/fhir/StructureDefinition/diagnosticReport-risk
            index: 5
            elements:
              valueReference:
                type: Reference
                isModifier: false
                mustSupport: true
                refers: ['http://hl7.org/fhir/StructureDefinition/RiskAssessment']
                index: 6
            required: [valueReference]
  effectiveDateTime: {isModifier: false, mustSupport: true, index: 17}
  status: {isModifier: false, mustSupport: true, index: 9}
  result:
    isModifier: false
    mustSupport: true
    array: true
    min: 1
    index: 21
    slicing:
      rules: open
      discriminator:
      - {path: resolve().code, type: pattern}
      min: 1
      slices:
        overall:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Assessment of overall results
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-overall']
            type: Reference
            mustSupport: true
            index: 23
          min: 0
          max: 1
        med-metabolism:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Metabolism Impact
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-metabolism']
            type: Reference
            mustSupport: true
            array: true
            index: 29
          min: 0
        med-efficacy:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Efficacy Impact
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-efficacy']
            type: Reference
            mustSupport: true
            array: true
            index: 30
          min: 0
        deletion-dup:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Assessment of deletion/duplication results
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-deletion-dup']
            type: Reference
            mustSupport: true
            index: 24
          min: 0
          max: 1
        inh-dis-path:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Inherited Disease Pathology
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-inh-dis-path']
            type: Reference
            mustSupport: true
            array: true
            index: 25
          min: 0
        obs-genotype:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Genotype
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-genotype']
            type: Reference
            mustSupport: true
            array: true
            index: 33
          min: 0
        som-predictive:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Somatic Predictive
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-som-predictive']
            type: Reference
            mustSupport: true
            array: true
            index: 28
          min: 0
        med-high-risk:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: High-Risk Medication Impact
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-high-risk']
            type: Reference
            mustSupport: true
            array: true
            index: 31
          min: 0
        som-prognostic:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Somatic Prognostic
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-som-prognostic']
            type: Reference
            mustSupport: true
            array: true
            index: 27
          min: 0
        obs-complex-variant:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Complex Variant
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-complex-variant']
            type: Reference
            mustSupport: true
            array: true
            index: 35
          min: 0
        obs-cytogenetic-nomenclature:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Cytogenetic Nomenclature
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-cytogenetic-nomenclature']
            type: Reference
            mustSupport: true
            array: true
            index: 32
          min: 0
        obs-region-studied:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Region Studied
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-region-studied']
            type: Reference
            mustSupport: true
            array: true
            index: 37
          min: 0
        obs-haplotype:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Haplotype
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-haplotype']
            type: Reference
            mustSupport: true
            array: true
            index: 34
          min: 0
        obs-gen-panel:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Genetic panel
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-gen-panel']
            type: Reference
            mustSupport: true
            array: true
            index: 22
          min: 0
        som-diagnostic:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Somatic Diagnostic
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-som-diagnostic']
            type: Reference
            mustSupport: true
            array: true
            index: 26
          min: 0
        obs-described-variant:
          match:
            resolve(): {code: null}
          schema:
            isModifier: false
            short: Described Variant
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-described-variant']
            type: Reference
            mustSupport: true
            array: true
            index: 36
          min: 0
  code:
    isModifier: false
    mustSupport: true
    index: 11
    elements:
      coding:
        isModifier: false
        mustSupport: true
        array: true
        min: 1
        index: 12
        slicing:
          rules: open
          discriminator:
          - {path: system, type: value}
          - {path: code, type: value}
          min: 1
          slices:
            code:
              match: {system: 'http://loinc.org', code: 81247-9}
              schema:
                isModifier: false
                mustSupport: true
                _required: true
                index: 13
                elements:
                  system:
                    type: uri
                    pattern: {type: Uri, value: 'http://loinc.org'}
                    isModifier: false
                    mustSupport: true
                    index: 14
                  code:
                    pattern: {type: Code, value: 81247-9}
                    isModifier: false
                    short: Master HL7 genetic variant reporting panel
                    type: code
                    mustSupport: true
                    index: 15
                required: [system, code]
    required: [coding]
  identifier: {type: Identifier, isModifier: false, mustSupport: true, index: 7}
  issued: {isModifier: false, mustSupport: true, index: 18}
  presentedForm: {isModifier: false, mustSupport: true, index: 40}
  basedOn:
    type: Reference
    isModifier: false
    mustSupport: true
    refers: ['http://hl7.org/fhir/StructureDefinition/ServiceRequest']
    array: true
    index: 8
  imagingStudy:
    type: Reference
    isModifier: false
    mustSupport: false
    refers: ['http://hl7.org/fhir/StructureDefinition/ImagingStudy']
    index: 38
  media: {isModifier: false, mustSupport: false, index: 39}
  subject:
    type: Reference
    isModifier: false
    mustSupport: true
    refers: ['http://hl7.org/fhir/StructureDefinition/Group', 'http://hl7.org/fhir/StructureDefinition/Location', 'http://hl7.org/fhir/StructureDefinition/Patient']
    index: 16
  performer:
    type: Reference
    isModifier: false
    mustSupport: true
    refers: ['http://hl7.org/fhir/StructureDefinition/Organization']
    index: 19
package_version: reporting-0.3.0
extensions:
  related-artifact: {url: 'http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/dr-relatedArtifact', min: 0, max: 1, isModifier: false, short: Citations and supporting info, type: Extension, mustSupport: true, index: 0}
  recommended-action:
    url: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/dr-recommendedAction
    isModifier: false
    short: Tasks relevant to report
    type: Extension
    mustSupport: true
    index: 1
    elements:
      valueReference:
        isModifier: false
        short: Recommended action tasks relevant to report
        refers: ['http://hl7.org/fhir/StructureDefinition/Task']
        type: Reference
        mustSupport: true
        index: 2
    required: [valueReference]
  supportingInfo:
    url: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/dr-supportingInfo
    isModifier: false
    short: Other resources that support report
    type: Extension
    mustSupport: true
    index: 3
    elements:
      valueReference:
        isModifier: false
        short: Family history with relevance to report
        refers: ['http://hl7.org/fhir/StructureDefinition/DocumentReference', 'http://hl7.org/fhir/StructureDefinition/FamilyMemberHistory', 'http://hl7.org/fhir/StructureDefinition/Observation', 'http://hl7.org/fhir/StructureDefinition/RiskAssessment']
        type: Reference
        mustSupport: true
        index: 4
    required: [valueReference]
  risk:
    url: http://hl7.org/fhir/StructureDefinition/diagnosticReport-risk
    type: Extension
    isModifier: false
    mustSupport: true
    index: 5
    elements:
      valueReference:
        type: Reference
        isModifier: false
        mustSupport: true
        refers: ['http://hl7.org/fhir/StructureDefinition/RiskAssessment']
        index: 6
    required: [valueReference]
class: profile
kind: resource
url: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnosticreport
base: http://hl7.org/fhir/StructureDefinition/DiagnosticReport
version: 0.3.0
required: [code, result]