{
  "description": "Die Sequenz-Probe umfasst Angaben zum Sequenzierungsisolat, zum Sequenzierungsprotokoll, zur Sequenzierungsstrategie, zu den Reagenzien der Verarbeitung (Primer-Schemes, die zur Amplicon-Sequenzierung verwendet wurden und die Adapter), sowie das Datum des Probeneingangs und das Probenentnahmedatum. Die IGS-ID (DEMIS-Identifier für die Sequenz), die beim Sequenzupload vergeben wird, wird in der entsprechenden Extension im processing-Element angegeben.",
  "_filename": "StructureDefinition-SpecimenSequence.json",
  "package_name": "rki.demis.igs",
  "date": "2024-07-24",
  "derivation": "constraint",
  "publisher": null,
  "fhirVersion": "4.0.1",
  "name": "SpecimenSequence",
  "abstract": true,
  "type": "Specimen",
  "experimental": null,
  "resourceType": "StructureDefinition",
  "title": "Sequenz-Probe",
  "package_version": "3.0.0",
  "status": "active",
  "id": "972b399f-119d-4767-877e-6cd1d0d47601",
  "kind": "resource",
  "url": "https://demis.rki.de/fhir/igs/StructureDefinition/SpecimenSequence",
  "version": "2.0.0",
  "differential": {
    "element": [ {
      "id": "Specimen.meta",
      "min": 1,
      "path": "Specimen.meta",
      "mustSupport": true
    }, {
      "id": "Specimen.meta.profile",
      "max": "1",
      "min": 1,
      "path": "Specimen.meta.profile",
      "mustSupport": true,
      "fixedCanonical": "https://demis.rki.de/fhir/igs/StructureDefinition/SpecimenSequence"
    }, {
      "id": "Specimen.extension",
      "min": 0,
      "path": "Specimen.extension",
      "slicing": {
        "rules": "open",
        "discriminator": [ {
          "path": "url",
          "type": "value"
        } ]
      }
    }, {
      "path": "Specimen.extension",
      "min": 0,
      "definition": "Zur Sequenzierung verwendetes Isolat (Laborinterne Nummer/Name/Identifier)",
      "isModifier": false,
      "short": "Zur Sequenzierung verwendetes Isolat (Laborinterne Nummer/Name/Identifier)",
      "type": [ {
        "code": "Extension",
        "profile": [ "https://demis.rki.de/fhir/igs/StructureDefinition/Isolate" ]
      } ],
      "mustSupport": true,
      "sliceName": "isolate",
      "max": "1",
      "id": "Specimen.extension:isolate"
    }, {
      "id": "Specimen.subject",
      "path": "Specimen.subject",
      "type": [ {
        "code": "Reference",
        "aggregation": [ "bundled" ],
        "targetProfile": [ "https://demis.rki.de/fhir/StructureDefinition/NotifiedPersonNotByName" ]
      } ],
      "short": "Betroffene Person (nichtnamentlich)",
      "definition": "Betroffene Person (nichtnamentlich)"
    }, {
      "id": "Specimen.processing",
      "min": 1,
      "path": "Specimen.processing"
    }, {
      "id": "Specimen.processing.description",
      "path": "Specimen.processing.description",
      "short": "Name des Sequenzierungsprotokolls",
      "definition": "Name des Sequenzierungsprotokolls",
      "mustSupport": true
    }, {
      "id": "Specimen.processing.procedure",
      "path": "Specimen.processing.procedure",
      "short": "Sequenzierungsstrategie",
      "binding": {
        "strength": "required",
        "valueSet": "https://demis.rki.de/fhir/igs/ValueSet/sequencingStrategy",
        "extension": [ {
          "url": "http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName",
          "valueString": "SpecimenProcessingProcedure"
        } ],
        "description": "Sequenzierungsstrategie"
      },
      "definition": "Sequenzierungsstrategie",
      "mustSupport": true
    }, {
      "id": "Specimen.processing.additive",
      "path": "Specimen.processing.additive",
      "slicing": {
        "rules": "closed",
        "discriminator": [ {
          "path": "resolve().code.coding",
          "type": "value"
        } ]
      }
    }, {
      "id": "Specimen.processing.additive:adapterSubstance",
      "path": "Specimen.processing.additive",
      "type": [ {
        "code": "Reference",
        "aggregation": [ "bundled" ],
        "targetProfile": [ "https://demis.rki.de/fhir/igs/StructureDefinition/AdapterSubstance" ]
      } ],
      "short": "Adapter, die zur Library preparation verwendet wurden",
      "sliceName": "adapterSubstance",
      "definition": "Adapter, die zur Library preparation verwendet wurden",
      "mustSupport": true
    }, {
      "id": "Specimen.processing.additive:primerSubstance",
      "path": "Specimen.processing.additive",
      "type": [ {
        "code": "Reference",
        "aggregation": [ "bundled" ],
        "targetProfile": [ "https://demis.rki.de/fhir/igs/StructureDefinition/PrimerSubstance" ]
      } ],
      "short": "Primer-Schemes, die zur Amplicon-Sequenzierung verwendet wurden",
      "sliceName": "primerSubstance",
      "definition": "Primer-Schemes, die zur Amplicon-Sequenzierung verwendet wurden",
      "mustSupport": true
    }, {
      "id": "Specimen.processing.time[x]",
      "path": "Specimen.processing.time[x]",
      "type": [ {
        "code": "dateTime"
      } ],
      "short": "Verarbeitungsdatum z.B. Sequenzierungsdatum",
      "definition": "Datum, an dem die Probe verarbeitet z.B. sequenziert wurde",
      "mustSupport": true
    } ]
  },
  "baseDefinition": "https://demis.rki.de/fhir/StructureDefinition/Specimen"
}