description: This cross-version extension represents MolecularSequence.quality from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.0.1 for use in FHIR R5. package_name: hl7.fhir.uv.xver-r4.r5 derivation: constraint name: ext_R4_MolecularSequence_quality type: Extension elements: extension: array: true min: 1 index: 0 slicing: rules: closed ordered: false discriminator: - {path: url, type: value} min: 1 slices: truthTP: match: {url: null} schema: isModifier: false short: True positives from the perspective of the truth data index: 25 elements: value: base: {path: 'Extension.value[x]'} short: True positives from the perspective of the truth data choices: [valueDecimal] index: 27 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: True positives from the perspective of the truth data choiceOf: value index: 28 fScore: match: {url: null} schema: isModifier: false short: F-score index: 53 elements: value: base: {path: 'Extension.value[x]'} short: F-score choices: [valueDecimal] index: 55 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: F-score choiceOf: value index: 56 truthFN: match: {url: null} schema: isModifier: false short: False negatives index: 33 elements: value: base: {path: 'Extension.value[x]'} short: False negatives choices: [valueDecimal] index: 35 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: False negatives choiceOf: value index: 36 queryFP: match: {url: null} schema: isModifier: false short: False positives index: 37 elements: value: base: {path: 'Extension.value[x]'} short: False positives choices: [valueDecimal] index: 39 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: False positives choiceOf: value index: 40 method: match: {url: null} schema: isModifier: false short: Method to get quality index: 21 elements: value: base: {path: 'Extension.value[x]'} short: Method to get quality choices: [valueCodeableConcept] index: 23 valueCodeableConcept: base: {path: 'Extension.value[x]'} type: CodeableConcept short: Method to get quality choiceOf: value index: 24 precision: match: {url: null} schema: isModifier: false short: Precision of comparison index: 45 elements: value: base: {path: 'Extension.value[x]'} short: Precision of comparison choices: [valueDecimal] index: 47 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: Precision of comparison choiceOf: value index: 48 start: match: {url: null} schema: isModifier: false short: Start position of the sequence index: 9 elements: value: base: {path: 'Extension.value[x]'} short: Start position of the sequence choices: [valueInteger] index: 11 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Start position of the sequence choiceOf: value index: 12 queryTP: match: {url: null} schema: isModifier: false short: True positives from the perspective of the query data index: 29 elements: value: base: {path: 'Extension.value[x]'} short: True positives from the perspective of the query data choices: [valueDecimal] index: 31 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: True positives from the perspective of the query data choiceOf: value index: 32 type: match: {url: null} schema: isModifier: false short: indel | snp | unknown _required: true index: 1 elements: value: base: {path: 'Extension.value[x]'} short: indel | snp | unknown choices: [valueCode] index: 3 valueCode: base: {path: 'Extension.value[x]'} type: code short: indel | snp | unknown choiceOf: value index: 4 recall: match: {url: null} schema: isModifier: false short: Recall of comparison index: 49 elements: value: base: {path: 'Extension.value[x]'} short: Recall of comparison choices: [valueDecimal] index: 51 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: Recall of comparison choiceOf: value index: 52 roc: match: {url: null} schema: isModifier: false short: Receiver Operator Characteristic (ROC) Curve index: 57 extensions: score: url: null isModifier: false short: Genotype quality score array: true index: 59 elements: value: base: {path: 'Extension.value[x]'} short: Genotype quality score choices: [valueInteger] index: 61 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Genotype quality score choiceOf: value index: 62 numTP: url: null isModifier: false short: Roc score true positive numbers array: true index: 63 elements: value: base: {path: 'Extension.value[x]'} short: Roc score true positive numbers choices: [valueInteger] index: 65 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Roc score true positive numbers choiceOf: value index: 66 numFP: url: null isModifier: false short: Roc score false positive numbers array: true index: 67 elements: value: base: {path: 'Extension.value[x]'} short: Roc score false positive numbers choices: [valueInteger] index: 69 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Roc score false positive numbers choiceOf: value index: 70 numFN: url: null isModifier: false short: Roc score false negative numbers array: true index: 71 elements: value: base: {path: 'Extension.value[x]'} short: Roc score false negative numbers choices: [valueInteger] index: 73 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Roc score false negative numbers choiceOf: value index: 74 precision: url: null isModifier: false short: Precision of the GQ score array: true index: 75 elements: value: base: {path: 'Extension.value[x]'} short: Precision of the GQ score choices: [valueDecimal] index: 77 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: Precision of the GQ score choiceOf: value index: 78 sensitivity: url: null isModifier: false short: Sensitivity of the GQ score array: true index: 79 elements: value: base: {path: 'Extension.value[x]'} short: Sensitivity of the GQ score choices: [valueDecimal] index: 81 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: Sensitivity of the GQ score choiceOf: value index: 82 fMeasure: url: null isModifier: false short: FScore of the GQ score array: true index: 83 elements: value: base: {path: 'Extension.value[x]'} short: FScore of the GQ score choices: [valueDecimal] index: 85 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: FScore of the GQ score choiceOf: value index: 86 elements: extension: array: true index: 58 slicing: rules: closed ordered: false discriminator: - {path: url, type: value} min: 0 slices: score: match: {url: null} schema: isModifier: false short: Genotype quality score array: true index: 59 elements: value: base: {path: 'Extension.value[x]'} short: Genotype quality score choices: [valueInteger] index: 61 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Genotype quality score choiceOf: value index: 62 numTP: match: {url: null} schema: isModifier: false short: Roc score true positive numbers array: true index: 63 elements: value: base: {path: 'Extension.value[x]'} short: Roc score true positive numbers choices: [valueInteger] index: 65 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Roc score true positive numbers choiceOf: value index: 66 numFP: match: {url: null} schema: isModifier: false short: Roc score false positive numbers array: true index: 67 elements: value: base: {path: 'Extension.value[x]'} short: Roc score false positive numbers choices: [valueInteger] index: 69 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Roc score false positive numbers choiceOf: value index: 70 numFN: match: {url: null} schema: isModifier: false short: Roc score false negative numbers array: true index: 71 elements: value: base: {path: 'Extension.value[x]'} short: Roc score false negative numbers choices: [valueInteger] index: 73 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Roc score false negative numbers choiceOf: value index: 74 precision: match: {url: null} schema: isModifier: false short: Precision of the GQ score array: true index: 75 elements: value: base: {path: 'Extension.value[x]'} short: Precision of the GQ score choices: [valueDecimal] index: 77 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: Precision of the GQ score choiceOf: value index: 78 sensitivity: match: {url: null} schema: isModifier: false short: Sensitivity of the GQ score array: true index: 79 elements: value: base: {path: 'Extension.value[x]'} short: Sensitivity of the GQ score choices: [valueDecimal] index: 81 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: Sensitivity of the GQ score choiceOf: value index: 82 fMeasure: match: {url: null} schema: isModifier: false short: FScore of the GQ score array: true index: 83 elements: value: base: {path: 'Extension.value[x]'} short: FScore of the GQ score choices: [valueDecimal] index: 85 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: FScore of the GQ score choiceOf: value index: 86 score: match: {url: null} schema: isModifier: false short: Quality score for the comparison index: 17 elements: value: base: {path: 'Extension.value[x]'} short: Quality score for the comparison choices: [valueQuantity] index: 19 valueQuantity: base: {path: 'Extension.value[x]'} type: Quantity short: Quality score for the comparison choiceOf: value index: 20 end: match: {url: null} schema: isModifier: false short: End position of the sequence index: 13 elements: value: base: {path: 'Extension.value[x]'} short: End position of the sequence choices: [valueInteger] index: 15 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: End position of the sequence choiceOf: value index: 16 standardSequence: match: {url: null} schema: isModifier: false short: Standard sequence for comparison index: 5 elements: value: base: {path: 'Extension.value[x]'} short: Standard sequence for comparison choices: [valueCodeableConcept] index: 7 valueCodeableConcept: base: {path: 'Extension.value[x]'} type: CodeableConcept short: Standard sequence for comparison choiceOf: value index: 8 gtFP: match: {url: null} schema: isModifier: false short: False positives where the non-REF alleles in the Truth and Query Call Sets match index: 41 elements: value: base: {path: 'Extension.value[x]'} short: False positives where the non-REF alleles in the Truth and Query Call Sets match choices: [valueDecimal] index: 43 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: False positives where the non-REF alleles in the Truth and Query Call Sets match choiceOf: value index: 44 url: pattern: {type: Uri, value: 'http://hl7.org/fhir/4.0/StructureDefinition/extension-MolecularSequence.quality'} index: 87 package_version: 0.0.1-snapshot-1 extensions: truthTP: url: null isModifier: false short: True positives from the perspective of the truth data index: 25 elements: value: base: {path: 'Extension.value[x]'} short: True positives from the perspective of the truth data choices: [valueDecimal] index: 27 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: True positives from the perspective of the truth data choiceOf: value index: 28 fScore: url: null isModifier: false short: F-score index: 53 elements: value: base: {path: 'Extension.value[x]'} short: F-score choices: [valueDecimal] index: 55 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: F-score choiceOf: value index: 56 truthFN: url: null isModifier: false short: False negatives index: 33 elements: value: base: {path: 'Extension.value[x]'} short: False negatives choices: [valueDecimal] index: 35 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: False negatives choiceOf: value index: 36 queryFP: url: null isModifier: false short: False positives index: 37 elements: value: base: {path: 'Extension.value[x]'} short: False positives choices: [valueDecimal] index: 39 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: False positives choiceOf: value index: 40 method: url: null isModifier: false short: Method to get quality index: 21 elements: value: base: {path: 'Extension.value[x]'} short: Method to get quality choices: [valueCodeableConcept] index: 23 valueCodeableConcept: base: {path: 'Extension.value[x]'} type: CodeableConcept short: Method to get quality choiceOf: value index: 24 precision: url: null isModifier: false short: Precision of comparison index: 45 elements: value: base: {path: 'Extension.value[x]'} short: Precision of comparison choices: [valueDecimal] index: 47 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: Precision of comparison choiceOf: value index: 48 start: url: null isModifier: false short: Start position of the sequence index: 9 elements: value: base: {path: 'Extension.value[x]'} short: Start position of the sequence choices: [valueInteger] index: 11 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Start position of the sequence choiceOf: value index: 12 queryTP: url: null isModifier: false short: True positives from the perspective of the query data index: 29 elements: value: base: {path: 'Extension.value[x]'} short: True positives from the perspective of the query data choices: [valueDecimal] index: 31 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: True positives from the perspective of the query data choiceOf: value index: 32 type: url: null isModifier: false short: indel | snp | unknown _required: true index: 1 elements: value: base: {path: 'Extension.value[x]'} short: indel | snp | unknown choices: [valueCode] index: 3 valueCode: base: {path: 'Extension.value[x]'} type: code short: indel | snp | unknown choiceOf: value index: 4 recall: url: null isModifier: false short: Recall of comparison index: 49 elements: value: base: {path: 'Extension.value[x]'} short: Recall of comparison choices: [valueDecimal] index: 51 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: Recall of comparison choiceOf: value index: 52 roc: url: null isModifier: false short: Receiver Operator Characteristic (ROC) Curve index: 57 extensions: score: url: null isModifier: false short: Genotype quality score array: true index: 59 elements: value: base: {path: 'Extension.value[x]'} short: Genotype quality score choices: [valueInteger] index: 61 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Genotype quality score choiceOf: value index: 62 numTP: url: null isModifier: false short: Roc score true positive numbers array: true index: 63 elements: value: base: {path: 'Extension.value[x]'} short: Roc score true positive numbers choices: [valueInteger] index: 65 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Roc score true positive numbers choiceOf: value index: 66 numFP: url: null isModifier: false short: Roc score false positive numbers array: true index: 67 elements: value: base: {path: 'Extension.value[x]'} short: Roc score false positive numbers choices: [valueInteger] index: 69 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Roc score false positive numbers choiceOf: value index: 70 numFN: url: null isModifier: false short: Roc score false negative numbers array: true index: 71 elements: value: base: {path: 'Extension.value[x]'} short: Roc score false negative numbers choices: [valueInteger] index: 73 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Roc score false negative numbers choiceOf: value index: 74 precision: url: null isModifier: false short: Precision of the GQ score array: true index: 75 elements: value: base: {path: 'Extension.value[x]'} short: Precision of the GQ score choices: [valueDecimal] index: 77 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: Precision of the GQ score choiceOf: value index: 78 sensitivity: url: null isModifier: false short: Sensitivity of the GQ score array: true index: 79 elements: value: base: {path: 'Extension.value[x]'} short: Sensitivity of the GQ score choices: [valueDecimal] index: 81 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: Sensitivity of the GQ score choiceOf: value index: 82 fMeasure: url: null isModifier: false short: FScore of the GQ score array: true index: 83 elements: value: base: {path: 'Extension.value[x]'} short: FScore of the GQ score choices: [valueDecimal] index: 85 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: FScore of the GQ score choiceOf: value index: 86 elements: extension: array: true index: 58 slicing: rules: closed ordered: false discriminator: - {path: url, type: value} min: 0 slices: score: match: {url: null} schema: isModifier: false short: Genotype quality score array: true index: 59 elements: value: base: {path: 'Extension.value[x]'} short: Genotype quality score choices: [valueInteger] index: 61 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Genotype quality score choiceOf: value index: 62 numTP: match: {url: null} schema: isModifier: false short: Roc score true positive numbers array: true index: 63 elements: value: base: {path: 'Extension.value[x]'} short: Roc score true positive numbers choices: [valueInteger] index: 65 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Roc score true positive numbers choiceOf: value index: 66 numFP: match: {url: null} schema: isModifier: false short: Roc score false positive numbers array: true index: 67 elements: value: base: {path: 'Extension.value[x]'} short: Roc score false positive numbers choices: [valueInteger] index: 69 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Roc score false positive numbers choiceOf: value index: 70 numFN: match: {url: null} schema: isModifier: false short: Roc score false negative numbers array: true index: 71 elements: value: base: {path: 'Extension.value[x]'} short: Roc score false negative numbers choices: [valueInteger] index: 73 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: Roc score false negative numbers choiceOf: value index: 74 precision: match: {url: null} schema: isModifier: false short: Precision of the GQ score array: true index: 75 elements: value: base: {path: 'Extension.value[x]'} short: Precision of the GQ score choices: [valueDecimal] index: 77 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: Precision of the GQ score choiceOf: value index: 78 sensitivity: match: {url: null} schema: isModifier: false short: Sensitivity of the GQ score array: true index: 79 elements: value: base: {path: 'Extension.value[x]'} short: Sensitivity of the GQ score choices: [valueDecimal] index: 81 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: Sensitivity of the GQ score choiceOf: value index: 82 fMeasure: match: {url: null} schema: isModifier: false short: FScore of the GQ score array: true index: 83 elements: value: base: {path: 'Extension.value[x]'} short: FScore of the GQ score choices: [valueDecimal] index: 85 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: FScore of the GQ score choiceOf: value index: 86 score: url: null isModifier: false short: Quality score for the comparison index: 17 elements: value: base: {path: 'Extension.value[x]'} short: Quality score for the comparison choices: [valueQuantity] index: 19 valueQuantity: base: {path: 'Extension.value[x]'} type: Quantity short: Quality score for the comparison choiceOf: value index: 20 end: url: null isModifier: false short: End position of the sequence index: 13 elements: value: base: {path: 'Extension.value[x]'} short: End position of the sequence choices: [valueInteger] index: 15 valueInteger: base: {path: 'Extension.value[x]'} type: integer short: End position of the sequence choiceOf: value index: 16 standardSequence: url: null isModifier: false short: Standard sequence for comparison index: 5 elements: value: base: {path: 'Extension.value[x]'} short: Standard sequence for comparison choices: [valueCodeableConcept] index: 7 valueCodeableConcept: base: {path: 'Extension.value[x]'} type: CodeableConcept short: Standard sequence for comparison choiceOf: value index: 8 gtFP: url: null isModifier: false short: False positives where the non-REF alleles in the Truth and Query Call Sets match index: 41 elements: value: base: {path: 'Extension.value[x]'} short: False positives where the non-REF alleles in the Truth and Query Call Sets match choices: [valueDecimal] index: 43 valueDecimal: base: {path: 'Extension.value[x]'} type: decimal short: False positives where the non-REF alleles in the Truth and Query Call Sets match choiceOf: value index: 44 class: extension kind: complex-type url: http://hl7.org/fhir/4.0/StructureDefinition/extension-MolecularSequence.quality base: http://hl7.org/fhir/StructureDefinition/Extension version: 0.0.1-snapshot-1 required: [url, extension]