description: This cross-version extension represents Sequence.quality from http://hl7.org/fhir/StructureDefinition/Sequence|3.0.2 for use in FHIR R5.
package_name: hl7.fhir.uv.xver-r3.r5
derivation: constraint
name: ext_R3_Sequence_quality
type: Extension
elements:
  extension:
    array: true
    min: 1
    index: 0
    slicing:
      rules: closed
      ordered: false
      discriminator:
      - {path: url, type: value}
      min: 1
      slices:
        truthTP:
          match: {url: null}
          schema:
            isModifier: false
            short: True positives from the perspective of the truth data
            index: 25
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: True positives from the perspective of the truth data
                choices: [valueDecimal]
                index: 27
              valueDecimal:
                base: {path: 'Extension.value[x]'}
                type: decimal
                short: True positives from the perspective of the truth data
                choiceOf: value
                index: 28
        fScore:
          match: {url: null}
          schema:
            isModifier: false
            short: F-score
            index: 53
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: F-score
                choices: [valueDecimal]
                index: 55
              valueDecimal:
                base: {path: 'Extension.value[x]'}
                type: decimal
                short: F-score
                choiceOf: value
                index: 56
        truthFN:
          match: {url: null}
          schema:
            isModifier: false
            short: False negatives
            index: 33
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: False negatives
                choices: [valueDecimal]
                index: 35
              valueDecimal:
                base: {path: 'Extension.value[x]'}
                type: decimal
                short: False negatives
                choiceOf: value
                index: 36
        queryFP:
          match: {url: null}
          schema:
            isModifier: false
            short: False positives
            index: 37
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: False positives
                choices: [valueDecimal]
                index: 39
              valueDecimal:
                base: {path: 'Extension.value[x]'}
                type: decimal
                short: False positives
                choiceOf: value
                index: 40
        method:
          match: {url: null}
          schema:
            isModifier: false
            short: Method to get quality
            index: 21
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: Method to get quality
                choices: [valueCodeableConcept]
                index: 23
              valueCodeableConcept:
                base: {path: 'Extension.value[x]'}
                type: CodeableConcept
                short: Method to get quality
                choiceOf: value
                index: 24
        precision:
          match: {url: null}
          schema:
            isModifier: false
            short: Precision of comparison
            index: 45
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: Precision of comparison
                choices: [valueDecimal]
                index: 47
              valueDecimal:
                base: {path: 'Extension.value[x]'}
                type: decimal
                short: Precision of comparison
                choiceOf: value
                index: 48
        start:
          match: {url: null}
          schema:
            isModifier: false
            short: Start position of the sequence
            index: 9
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: Start position of the sequence
                choices: [valueInteger]
                index: 11
              valueInteger:
                base: {path: 'Extension.value[x]'}
                type: integer
                short: Start position of the sequence
                choiceOf: value
                index: 12
        queryTP:
          match: {url: null}
          schema:
            isModifier: false
            short: True positives from the perspective of the query data
            index: 29
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: True positives from the perspective of the query data
                choices: [valueDecimal]
                index: 31
              valueDecimal:
                base: {path: 'Extension.value[x]'}
                type: decimal
                short: True positives from the perspective of the query data
                choiceOf: value
                index: 32
        type:
          match: {url: null}
          schema:
            isModifier: false
            short: indel | snp | unknown
            _required: true
            index: 1
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: indel | snp | unknown
                choices: [valueCode]
                index: 3
              valueCode:
                base: {path: 'Extension.value[x]'}
                type: code
                short: indel | snp | unknown
                choiceOf: value
                index: 4
        recall:
          match: {url: null}
          schema:
            isModifier: false
            short: Recall of comparison
            index: 49
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: Recall of comparison
                choices: [valueDecimal]
                index: 51
              valueDecimal:
                base: {path: 'Extension.value[x]'}
                type: decimal
                short: Recall of comparison
                choiceOf: value
                index: 52
        score:
          match: {url: null}
          schema:
            isModifier: false
            short: Quality score for the comparison
            index: 17
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: Quality score for the comparison
                choices: [valueQuantity]
                index: 19
              valueQuantity:
                base: {path: 'Extension.value[x]'}
                type: Quantity
                short: Quality score for the comparison
                choiceOf: value
                index: 20
        end:
          match: {url: null}
          schema:
            isModifier: false
            short: End position of the sequence
            index: 13
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: End position of the sequence
                choices: [valueInteger]
                index: 15
              valueInteger:
                base: {path: 'Extension.value[x]'}
                type: integer
                short: End position of the sequence
                choiceOf: value
                index: 16
        standardSequence:
          match: {url: null}
          schema:
            isModifier: false
            short: Standard sequence for comparison
            index: 5
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: Standard sequence for comparison
                choices: [valueCodeableConcept]
                index: 7
              valueCodeableConcept:
                base: {path: 'Extension.value[x]'}
                type: CodeableConcept
                short: Standard sequence for comparison
                choiceOf: value
                index: 8
        gtFP:
          match: {url: null}
          schema:
            isModifier: false
            short: False positives where the non-REF alleles in the Truth and Query Call Sets match
            index: 41
            elements:
              value:
                base: {path: 'Extension.value[x]'}
                short: False positives where the non-REF alleles in the Truth and Query Call Sets match
                choices: [valueDecimal]
                index: 43
              valueDecimal:
                base: {path: 'Extension.value[x]'}
                type: decimal
                short: False positives where the non-REF alleles in the Truth and Query Call Sets match
                choiceOf: value
                index: 44
  url:
    pattern: {type: Uri, value: 'http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.quality'}
    index: 57
package_version: 0.0.1-snapshot-1
extensions:
  truthTP:
    url: null
    isModifier: false
    short: True positives from the perspective of the truth data
    index: 25
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: True positives from the perspective of the truth data
        choices: [valueDecimal]
        index: 27
      valueDecimal:
        base: {path: 'Extension.value[x]'}
        type: decimal
        short: True positives from the perspective of the truth data
        choiceOf: value
        index: 28
  fScore:
    url: null
    isModifier: false
    short: F-score
    index: 53
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: F-score
        choices: [valueDecimal]
        index: 55
      valueDecimal:
        base: {path: 'Extension.value[x]'}
        type: decimal
        short: F-score
        choiceOf: value
        index: 56
  truthFN:
    url: null
    isModifier: false
    short: False negatives
    index: 33
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: False negatives
        choices: [valueDecimal]
        index: 35
      valueDecimal:
        base: {path: 'Extension.value[x]'}
        type: decimal
        short: False negatives
        choiceOf: value
        index: 36
  queryFP:
    url: null
    isModifier: false
    short: False positives
    index: 37
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: False positives
        choices: [valueDecimal]
        index: 39
      valueDecimal:
        base: {path: 'Extension.value[x]'}
        type: decimal
        short: False positives
        choiceOf: value
        index: 40
  method:
    url: null
    isModifier: false
    short: Method to get quality
    index: 21
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: Method to get quality
        choices: [valueCodeableConcept]
        index: 23
      valueCodeableConcept:
        base: {path: 'Extension.value[x]'}
        type: CodeableConcept
        short: Method to get quality
        choiceOf: value
        index: 24
  precision:
    url: null
    isModifier: false
    short: Precision of comparison
    index: 45
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: Precision of comparison
        choices: [valueDecimal]
        index: 47
      valueDecimal:
        base: {path: 'Extension.value[x]'}
        type: decimal
        short: Precision of comparison
        choiceOf: value
        index: 48
  start:
    url: null
    isModifier: false
    short: Start position of the sequence
    index: 9
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: Start position of the sequence
        choices: [valueInteger]
        index: 11
      valueInteger:
        base: {path: 'Extension.value[x]'}
        type: integer
        short: Start position of the sequence
        choiceOf: value
        index: 12
  queryTP:
    url: null
    isModifier: false
    short: True positives from the perspective of the query data
    index: 29
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: True positives from the perspective of the query data
        choices: [valueDecimal]
        index: 31
      valueDecimal:
        base: {path: 'Extension.value[x]'}
        type: decimal
        short: True positives from the perspective of the query data
        choiceOf: value
        index: 32
  type:
    url: null
    isModifier: false
    short: indel | snp | unknown
    _required: true
    index: 1
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: indel | snp | unknown
        choices: [valueCode]
        index: 3
      valueCode:
        base: {path: 'Extension.value[x]'}
        type: code
        short: indel | snp | unknown
        choiceOf: value
        index: 4
  recall:
    url: null
    isModifier: false
    short: Recall of comparison
    index: 49
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: Recall of comparison
        choices: [valueDecimal]
        index: 51
      valueDecimal:
        base: {path: 'Extension.value[x]'}
        type: decimal
        short: Recall of comparison
        choiceOf: value
        index: 52
  score:
    url: null
    isModifier: false
    short: Quality score for the comparison
    index: 17
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: Quality score for the comparison
        choices: [valueQuantity]
        index: 19
      valueQuantity:
        base: {path: 'Extension.value[x]'}
        type: Quantity
        short: Quality score for the comparison
        choiceOf: value
        index: 20
  end:
    url: null
    isModifier: false
    short: End position of the sequence
    index: 13
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: End position of the sequence
        choices: [valueInteger]
        index: 15
      valueInteger:
        base: {path: 'Extension.value[x]'}
        type: integer
        short: End position of the sequence
        choiceOf: value
        index: 16
  standardSequence:
    url: null
    isModifier: false
    short: Standard sequence for comparison
    index: 5
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: Standard sequence for comparison
        choices: [valueCodeableConcept]
        index: 7
      valueCodeableConcept:
        base: {path: 'Extension.value[x]'}
        type: CodeableConcept
        short: Standard sequence for comparison
        choiceOf: value
        index: 8
  gtFP:
    url: null
    isModifier: false
    short: False positives where the non-REF alleles in the Truth and Query Call Sets match
    index: 41
    elements:
      value:
        base: {path: 'Extension.value[x]'}
        short: False positives where the non-REF alleles in the Truth and Query Call Sets match
        choices: [valueDecimal]
        index: 43
      valueDecimal:
        base: {path: 'Extension.value[x]'}
        type: decimal
        short: False positives where the non-REF alleles in the Truth and Query Call Sets match
        choiceOf: value
        index: 44
class: extension
kind: complex-type
url: http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.quality
base: http://hl7.org/fhir/StructureDefinition/Extension
version: 0.0.1-snapshot-1
required: [url, extension]