description: Sequenzierbezogenen Metriken der Genomic Study Analysis
package_name: de.medizininformatikinitiative.kerndatensatz.mtb
derivation: constraint
name: MII_EX_MTB_GenomicStudyAnalysis_QC
type: Extension
elements:
  extension:
    mustSupport: true
    index: 0
    slicing:
      slices:
        read-depth:
          match: {}
          schema:
            mustSupport: true
            index: 0
            extensions: {}
            elements:
              extension: {index: 1}
              url:
                pattern: {type: uri, value: read-depth}
                mustSupport: true
                type: uri
                index: 2
              value:
                choices: []
                index: 4
                slicing:
                  rules: open
                  ordered: false
                  discriminator:
                  - {path: $this, type: type}
                  min: 1
                  slices:
                    valueQuantity:
                      match: {}
                      schema:
                        short: Read Depth
                        mustSupport: true
                        choices: [valueQuantity]
                        _required: true
                        index: 6
                      min: 1
                      max: 1
              valueQuantity:
                short: Read Depth
                type: Quantity
                mustSupport: true
                choiceOf: value
                index: 7
                slicing:
                  slices:
                    valueQuantity:
                      match: {}
                      schema: {short: Read Depth, type: Quantity, mustSupport: true, _required: true, choiceOf: value, index: 7}
                      min: 1
                      max: 1
            required: [value, valueQuantity]
        read-length:
          match: {}
          schema:
            mustSupport: true
            index: 8
            extensions: {}
            elements:
              extension: {index: 9}
              url:
                pattern: {type: uri, value: read-length}
                mustSupport: true
                type: uri
                index: 10
              value:
                choices: []
                index: 12
                slicing:
                  rules: open
                  ordered: false
                  discriminator:
                  - {path: $this, type: type}
                  min: 1
                  slices:
                    valueQuantity:
                      match: {}
                      schema:
                        short: Read Length
                        mustSupport: true
                        choices: [valueQuantity]
                        _required: true
                        index: 14
                      min: 1
                      max: 1
              valueQuantity:
                short: Read Length
                type: Quantity
                mustSupport: true
                choiceOf: value
                index: 15
                slicing:
                  slices:
                    valueQuantity:
                      match: {}
                      schema: {short: Read Length, type: Quantity, mustSupport: true, _required: true, choiceOf: value, index: 15}
                      min: 1
                      max: 1
            required: [value, valueQuantity]
        sequencing-coverage:
          match: {}
          schema:
            mustSupport: true
            index: 16
            extensions: {}
            elements:
              extension: {index: 17}
              url:
                pattern: {type: uri, value: sequencing-coverage}
                mustSupport: true
                type: uri
                index: 18
              value:
                choices: []
                index: 20
                slicing:
                  rules: open
                  ordered: false
                  discriminator:
                  - {path: $this, type: type}
                  min: 1
                  slices:
                    valueQuantity:
                      match: {}
                      schema:
                        short: Sequencing Coverage
                        mustSupport: true
                        choices: [valueQuantity]
                        _required: true
                        index: 22
                      min: 1
                      max: 1
              valueQuantity:
                short: Sequencing Coverage
                type: Quantity
                mustSupport: true
                choiceOf: value
                index: 23
                slicing:
                  slices:
                    valueQuantity:
                      match: {}
                      schema: {short: Sequencing Coverage, type: Quantity, mustSupport: true, _required: true, choiceOf: value, index: 23}
                      min: 1
                      max: 1
            required: [value, valueQuantity]
        metrics-description:
          match: {}
          schema:
            mustSupport: true
            index: 24
            extensions: {}
            elements:
              extension: {index: 25}
              url:
                pattern: {type: uri, value: metrics-description}
                mustSupport: true
                type: uri
                index: 26
              value:
                choices: []
                index: 28
                slicing:
                  rules: open
                  ordered: false
                  discriminator:
                  - {path: $this, type: type}
                  min: 1
                  slices:
                    valueString:
                      match: {}
                      schema:
                        short: Metrics Description
                        mustSupport: true
                        choices: [valueString]
                        _required: true
                        index: 30
                      min: 1
                      max: 1
              valueString:
                short: Metrics Description
                type: string
                mustSupport: true
                choiceOf: value
                index: 31
                slicing:
                  slices:
                    valueString:
                      match: {}
                      schema: {short: Metrics Description, type: string, mustSupport: true, _required: true, choiceOf: value, index: 31}
                      min: 1
                      max: 1
            required: [value, valueString]
        sequencing-read-type:
          match: {}
          schema:
            mustSupport: true
            index: 32
            extensions: {}
            elements:
              extension: {index: 33}
              url:
                pattern: {type: uri, value: sequencing-read-type}
                mustSupport: true
                type: uri
                index: 34
              value:
                choices: []
                index: 36
                slicing:
                  rules: open
                  ordered: false
                  discriminator:
                  - {path: $this, type: type}
                  min: 1
                  slices:
                    valueCodeableConcept:
                      match: {}
                      schema:
                        short: Sequencing Read Type
                        mustSupport: true
                        choices: [valueCodeableConcept]
                        _required: true
                        index: 38
                      min: 1
                      max: 1
              valueCodeableConcept:
                short: Sequencing Read Type
                type: CodeableConcept
                mustSupport: true
                choiceOf: value
                index: 39
                slicing:
                  slices:
                    valueCodeableConcept:
                      match: {}
                      schema: {short: Sequencing Read Type, type: CodeableConcept, mustSupport: true, _required: true, choiceOf: value, index: 39}
                      min: 1
                      max: 1
            required: [value, valueCodeableConcept]
        gap-statistics:
          match: {}
          schema:
            mustSupport: true
            index: 40
            extensions: {}
            elements:
              extension: {index: 41}
              url:
                pattern: {type: uri, value: gap-statistics}
                mustSupport: true
                type: uri
                index: 42
              value:
                choices: []
                index: 44
                slicing:
                  rules: open
                  ordered: false
                  discriminator:
                  - {path: $this, type: type}
                  min: 1
                  slices:
                    valueQuantity:
                      match: {}
                      schema:
                        short: Gap Statistics
                        mustSupport: true
                        choices: [valueQuantity]
                        _required: true
                        index: 46
                      min: 1
                      max: 1
              valueQuantity:
                short: Gap Statistics
                type: Quantity
                mustSupport: true
                choiceOf: value
                index: 47
                slicing:
                  slices:
                    valueQuantity:
                      match: {}
                      schema: {short: Gap Statistics, type: Quantity, mustSupport: true, _required: true, choiceOf: value, index: 47}
                      min: 1
                      max: 1
            required: [value, valueQuantity]
  url:
    pattern: {type: uri, value: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-ex-mtb-genomic-study-analysis-qc'}
    type: uri
    index: 48
  value:
    choices: []
    index: 50
package_version: 2025.0.0-ballot
extensions:
  read-depth:
    url: null
    mustSupport: true
    index: 0
    extensions: {}
    elements:
      extension: {index: 1}
      url:
        pattern: {type: uri, value: read-depth}
        mustSupport: true
        type: uri
        index: 2
      value:
        choices: []
        index: 4
        slicing:
          rules: open
          ordered: false
          discriminator:
          - {path: $this, type: type}
          min: 1
          slices:
            valueQuantity:
              match: {}
              schema:
                short: Read Depth
                mustSupport: true
                choices: [valueQuantity]
                _required: true
                index: 6
              min: 1
              max: 1
      valueQuantity:
        short: Read Depth
        type: Quantity
        mustSupport: true
        choiceOf: value
        index: 7
        slicing:
          slices:
            valueQuantity:
              match: {}
              schema: {short: Read Depth, type: Quantity, mustSupport: true, _required: true, choiceOf: value, index: 7}
              min: 1
              max: 1
    required: [value, valueQuantity]
  read-length:
    url: null
    mustSupport: true
    index: 8
    extensions: {}
    elements:
      extension: {index: 9}
      url:
        pattern: {type: uri, value: read-length}
        mustSupport: true
        type: uri
        index: 10
      value:
        choices: []
        index: 12
        slicing:
          rules: open
          ordered: false
          discriminator:
          - {path: $this, type: type}
          min: 1
          slices:
            valueQuantity:
              match: {}
              schema:
                short: Read Length
                mustSupport: true
                choices: [valueQuantity]
                _required: true
                index: 14
              min: 1
              max: 1
      valueQuantity:
        short: Read Length
        type: Quantity
        mustSupport: true
        choiceOf: value
        index: 15
        slicing:
          slices:
            valueQuantity:
              match: {}
              schema: {short: Read Length, type: Quantity, mustSupport: true, _required: true, choiceOf: value, index: 15}
              min: 1
              max: 1
    required: [value, valueQuantity]
  sequencing-coverage:
    url: null
    mustSupport: true
    index: 16
    extensions: {}
    elements:
      extension: {index: 17}
      url:
        pattern: {type: uri, value: sequencing-coverage}
        mustSupport: true
        type: uri
        index: 18
      value:
        choices: []
        index: 20
        slicing:
          rules: open
          ordered: false
          discriminator:
          - {path: $this, type: type}
          min: 1
          slices:
            valueQuantity:
              match: {}
              schema:
                short: Sequencing Coverage
                mustSupport: true
                choices: [valueQuantity]
                _required: true
                index: 22
              min: 1
              max: 1
      valueQuantity:
        short: Sequencing Coverage
        type: Quantity
        mustSupport: true
        choiceOf: value
        index: 23
        slicing:
          slices:
            valueQuantity:
              match: {}
              schema: {short: Sequencing Coverage, type: Quantity, mustSupport: true, _required: true, choiceOf: value, index: 23}
              min: 1
              max: 1
    required: [value, valueQuantity]
  metrics-description:
    url: null
    mustSupport: true
    index: 24
    extensions: {}
    elements:
      extension: {index: 25}
      url:
        pattern: {type: uri, value: metrics-description}
        mustSupport: true
        type: uri
        index: 26
      value:
        choices: []
        index: 28
        slicing:
          rules: open
          ordered: false
          discriminator:
          - {path: $this, type: type}
          min: 1
          slices:
            valueString:
              match: {}
              schema:
                short: Metrics Description
                mustSupport: true
                choices: [valueString]
                _required: true
                index: 30
              min: 1
              max: 1
      valueString:
        short: Metrics Description
        type: string
        mustSupport: true
        choiceOf: value
        index: 31
        slicing:
          slices:
            valueString:
              match: {}
              schema: {short: Metrics Description, type: string, mustSupport: true, _required: true, choiceOf: value, index: 31}
              min: 1
              max: 1
    required: [value, valueString]
  sequencing-read-type:
    url: null
    mustSupport: true
    index: 32
    extensions: {}
    elements:
      extension: {index: 33}
      url:
        pattern: {type: uri, value: sequencing-read-type}
        mustSupport: true
        type: uri
        index: 34
      value:
        choices: []
        index: 36
        slicing:
          rules: open
          ordered: false
          discriminator:
          - {path: $this, type: type}
          min: 1
          slices:
            valueCodeableConcept:
              match: {}
              schema:
                short: Sequencing Read Type
                mustSupport: true
                choices: [valueCodeableConcept]
                _required: true
                index: 38
              min: 1
              max: 1
      valueCodeableConcept:
        short: Sequencing Read Type
        type: CodeableConcept
        mustSupport: true
        choiceOf: value
        index: 39
        slicing:
          slices:
            valueCodeableConcept:
              match: {}
              schema: {short: Sequencing Read Type, type: CodeableConcept, mustSupport: true, _required: true, choiceOf: value, index: 39}
              min: 1
              max: 1
    required: [value, valueCodeableConcept]
  gap-statistics:
    url: null
    mustSupport: true
    index: 40
    extensions: {}
    elements:
      extension: {index: 41}
      url:
        pattern: {type: uri, value: gap-statistics}
        mustSupport: true
        type: uri
        index: 42
      value:
        choices: []
        index: 44
        slicing:
          rules: open
          ordered: false
          discriminator:
          - {path: $this, type: type}
          min: 1
          slices:
            valueQuantity:
              match: {}
              schema:
                short: Gap Statistics
                mustSupport: true
                choices: [valueQuantity]
                _required: true
                index: 46
              min: 1
              max: 1
      valueQuantity:
        short: Gap Statistics
        type: Quantity
        mustSupport: true
        choiceOf: value
        index: 47
        slicing:
          slices:
            valueQuantity:
              match: {}
              schema: {short: Gap Statistics, type: Quantity, mustSupport: true, _required: true, choiceOf: value, index: 47}
              min: 1
              max: 1
    required: [value, valueQuantity]
class: extension
kind: complex-type
url: https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-ex-mtb-genomic-study-analysis-qc
base: http://hl7.org/fhir/StructureDefinition/Extension
version: 2024.0.0-ballot