{
  "description": "This value set contains some provisional codes created for the COVID-19 response. It may be incomplete, as not all provisional COVID-19 codes are available in VSAC at the time of publication. Please contact the CSTE RCKMS Content Team for a complete list of codes to be included in this value set.",
  "compose": {
    "include": [ {
      "system": "http://loinc.org",
      "concept": [ {
        "code": "94764-8",
        "display": "SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing"
      }, {
        "code": "96741-4",
        "display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by Sequencing"
      }, {
        "code": "96751-3",
        "display": "SARS-CoV-2 (COVID-19) S gene mutation detected [Identifier] in Specimen by Molecular genetics method"
      }, {
        "code": "96752-1",
        "display": "SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molecular genetics method"
      }, {
        "code": "96755-4",
        "display": "SARS-CoV-2 (COVID-19) variant interpretation in Specimen Narrative"
      }, {
        "code": "96895-8",
        "display": "SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics method"
      }, {
        "code": "96896-6",
        "display": "SARS-CoV-2 (COVID-19) clade [Type] in Specimen by Molecular genetics method"
      }, {
        "code": "99314-7",
        "display": "SARS-CoV-2 (COVID-19) RdRp gene mutation detected [Identifier] in Specimen by Molecular genetics method"
      } ]
    } ]
  },
  "_filename": "del/ValueSet-2.16.840.1.113762.1.4.1146.1409.json",
  "package_name": "us.nlm.vsac",
  "date": "2021-12-15T01:01:52-05:00",
  "meta": {
    "profile": [ "http://hl7.org/fhir/StructureDefinition/shareablevalueset", "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm" ],
    "versionId": "11",
    "lastUpdated": "2021-12-15T01:01:52.000-05:00"
  },
  "publisher": "CSTE Steward",
  "jurisdiction": [ {
    "coding": [ {
      "code": "US",
      "system": "urn:iso:std:iso:3166"
    } ]
  } ],
  "purpose": "(Clinical Focus: This set of values contains codes for lab test names that may be ordered or ‘observed’ for detection of SARS-CoV-2 genomic sequence or gene mutation by Molecular genetics method.),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: SARS-like Coronavirus; Coronavirus 2),(Exclusion Criteria: none)",
  "name": "COVID_19TestsForSARS_CoV_2GenomicSequence",
  "type": null,
  "experimental": "false",
  "resourceType": "ValueSet",
  "expansion": {
    "total": 8,
    "contains": [ {
      "code": "94764-8",
      "system": "http://loinc.org",
      "display": "SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing",
      "version": "2.76"
    }, {
      "code": "96741-4",
      "system": "http://loinc.org",
      "display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by Sequencing",
      "version": "2.76"
    }, {
      "code": "96751-3",
      "system": "http://loinc.org",
      "display": "SARS-CoV-2 (COVID-19) S gene mutation detected [Identifier] in Specimen by Molecular genetics method",
      "version": "2.76"
    }, {
      "code": "96752-1",
      "system": "http://loinc.org",
      "display": "SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molecular genetics method",
      "version": "2.76"
    }, {
      "code": "96755-4",
      "system": "http://loinc.org",
      "display": "SARS-CoV-2 (COVID-19) variant interpretation in Specimen Narrative",
      "version": "2.76"
    }, {
      "code": "96895-8",
      "system": "http://loinc.org",
      "display": "SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics method",
      "version": "2.76"
    }, {
      "code": "96896-6",
      "system": "http://loinc.org",
      "display": "SARS-CoV-2 (COVID-19) clade [Type] in Specimen by Molecular genetics method",
      "version": "2.76"
    }, {
      "code": "99314-7",
      "system": "http://loinc.org",
      "display": "SARS-CoV-2 (COVID-19) RdRp gene mutation detected [Identifier] in Specimen by Molecular genetics method",
      "version": "2.76"
    } ],
    "timestamp": "2023-11-26T16:49:32-05:00",
    "identifier": "urn:uuid:4404ef10-8b44-4ca0-9972-1435592c5fab"
  },
  "title": "COVID_19 (Tests for SARS_CoV_2 Genomic Sequence)",
  "package_version": "0.18.0",
  "extension": [ {
    "url": "http://hl7.org/fhir/StructureDefinition/valueset-author",
    "valueString": "CSTE Author"
  }, {
    "url": "http://hl7.org/fhir/StructureDefinition/valueset-keyWord",
    "valueString": "2019nCoV,Trigger"
  }, {
    "url": "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate",
    "valueDate": "2022-12-15"
  }, {
    "url": "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate",
    "valueDate": "2021-12-15"
  } ],
  "status": "active",
  "id": "844ba4a9-1ac8-4547-8c2d-f3ef14477d57",
  "kind": null,
  "url": "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1409",
  "identifier": [ {
    "value": "urn:oid:2.16.840.1.113762.1.4.1146.1409",
    "system": "urn:ietf:rfc:3986"
  } ],
  "version": "20211215"
}