{
  "description": "Backport of http://hl7.org/fhir/genomicstudy-dataformat",
  "_filename": "CodeSystem-genomic-study-data-format-cs.json",
  "package_name": "hl7.fhir.uv.genomics-reporting",
  "date": "2023-12-18T22:45:59+00:00",
  "publisher": "HL7 International / Clinical Genomics",
  "jurisdiction": [ {
    "coding": [ {
      "code": "001",
      "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
      "display": "World"
    } ]
  } ],
  "content": "complete",
  "name": "GenomicStudyDataFormatCS",
  "type": null,
  "experimental": "true",
  "resourceType": "CodeSystem",
  "title": "Genomic Study Data Format CodeSystem",
  "package_version": "3.0.0-ballot",
  "extension": [ {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
    "valueCode": "cg"
  } ],
  "status": "active",
  "id": "806095fe-83b8-4e64-833d-81f461aa6715",
  "kind": null,
  "count": 40,
  "url": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs",
  "concept": [ {
    "code": "bam",
    "display": "BAM"
  }, {
    "code": "bed",
    "display": "BED"
  }, {
    "code": "bedpe",
    "display": "BEDPE"
  }, {
    "code": "bedgraph",
    "display": "BedGraph"
  }, {
    "code": "bigbed",
    "display": "bigBed"
  }, {
    "code": "bigWig",
    "display": "bigWig"
  }, {
    "code": "birdsuite-files",
    "display": "Birdsuite-Files"
  }, {
    "code": "broadpeak",
    "display": "broadPeak"
  }, {
    "code": "cbs",
    "display": "CBS"
  }, {
    "code": "chemical-reactivity-probing-profiles",
    "display": "Chemical-Reactivity-Probing-Profiles"
  }, {
    "code": "chrom-sizes",
    "display": "chrom-sizes"
  }, {
    "code": "cn",
    "display": "CN"
  }, {
    "code": "custom-file-formats",
    "display": "Custom-File-Formats"
  }, {
    "code": "cytoband",
    "display": "Cytoband"
  }, {
    "code": "fasta",
    "display": "FASTA"
  }, {
    "code": "gct",
    "display": "GCT"
  }, {
    "code": "cram",
    "display": "CRAM"
  }, {
    "code": "genepred",
    "display": "genePred"
  }, {
    "code": "gff-gtf",
    "display": "GFF/GTF"
  }, {
    "code": "gistic",
    "display": "GISTIC"
  }, {
    "code": "goby",
    "display": "Goby"
  }, {
    "code": "gwas",
    "display": "GWAS"
  }, {
    "code": "igv",
    "display": "IGV"
  }, {
    "code": "loh",
    "display": "LOH"
  }, {
    "code": "maf-multiple-alignment-format",
    "display": "MAF-Multiple Alignment Format"
  }, {
    "code": "maf-mutation-annotation-format",
    "display": "MAF-Mutation-Annotation-Format"
  }, {
    "code": "merged-bam-file",
    "display": "Merged BAM File"
  }, {
    "code": "mut",
    "display": "MUT"
  }, {
    "code": "narrowpeak",
    "display": "narrowPeak"
  }, {
    "code": "psl",
    "display": "PSL"
  }, {
    "code": "res",
    "display": "RES"
  }, {
    "code": "rna-secondary-structure-formats",
    "display": "RNA-Secondary-Structure-Formats"
  }, {
    "code": "sam",
    "display": "SAM"
  }, {
    "code": "sample-info-attributes-file",
    "display": "Sample-Info-Attributes-file"
  }, {
    "code": "seg",
    "display": "SEG"
  }, {
    "code": "tdf",
    "display": "TDF"
  }, {
    "code": "track-line",
    "display": "Track Line"
  }, {
    "code": "type-line",
    "display": "Type Line"
  }, {
    "code": "vcf",
    "display": "VCF"
  }, {
    "code": "wig",
    "display": "WIG"
  } ],
  "caseSensitive": true,
  "version": "3.0.0-ballot",
  "contact": [ {
    "name": "HL7 International / Clinical Genomics",
    "telecom": [ {
      "value": "http://www.hl7.org/Special/committees/clingenomics",
      "system": "url"
    }, {
      "value": "cg@lists.HL7.org",
      "system": "email"
    } ]
  } ]
}