{
"description": "Test List (COVID-19) from [LOINC]",
"compose": {
"include": [ {
"system": "http://hitstdio.ntunhs.edu.tw/fhir/CodeSystem/loinc-tests-covid-19",
"concept": [ {
"code": "96766-1",
"display": "GISAID sequence accession number"
}, {
"code": "96896-6",
"display": "SARS coronavirus 2 (COVID-19) clade [Type] in Specimen by Molecular genetics method"
}, {
"code": "96894-1",
"display": "SARS coronavirus 2 (COVID-19) whole genome sequencing and identification panel - Specimen by Molecular genetics method"
}, {
"code": "96764-6",
"display": "SARS-CoV-2 (COVID-19) E gene [Cycle Threshold #] in Respiratory specimen by NAA with probe detection"
}, {
"code": "96763-8",
"display": "SARS-CoV-2 (COVID-19) E gene [Presence] in Respiratory specimen by NAA with probe detection"
}, {
"code": "96742-2",
"display": "SARS-CoV-2 (COVID-19) IgG Ab [Mass/volume] in Serum or Plasma by Immunoassay"
}, {
"code": "96895-8",
"display": "SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics method"
}, {
"code": "96898-2",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection"
}, {
"code": "96899-0",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection"
}, {
"code": "96797-6",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Oropharyngeal wash by NAA with probe detection"
}, {
"code": "96829-7",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen from Donor by NAA with probe detection"
}, {
"code": "96897-4",
"display": "SARS-CoV-2 (COVID-19) RNA panel - Oropharyngeal wash by NAA with probe detection"
}, {
"code": "96900-6",
"display": "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Oropharyngeal wash by NAA with probe detection"
}, {
"code": "96765-3",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
}, {
"code": "96752-1",
"display": "SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molecular genetics method"
}, {
"code": "96751-3",
"display": "SARS-CoV-2 (COVID-19) S gene mutation detected [Identifier] in Specimen by Molecular genetics method"
}, {
"code": "96741-4",
"display": "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by Sequencing"
}, {
"code": "96755-4",
"display": "SARS-CoV-2 (COVID-19) variant interpretation in Specimen Narrative"
}, {
"code": "95209-3",
"display": "SARS-CoV+SARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory specimen by Rapid immunoassay"
}, {
"code": "94763-0",
"display": "SARS-CoV-2 (COVID-19) [Presence] in Specimen by Organism specific culture"
}, {
"code": "94661-6",
"display": "SARS-CoV-2 (COVID-19) Ab [Interpretation] in Serum or Plasma"
}, {
"code": "94762-2",
"display": "SARS-CoV-2 (COVID-19) Ab [Presence] in Serum or Plasma by Immunoassay"
}, {
"code": "94769-7",
"display": "SARS-CoV-2 (COVID-19) Ab [Units/volume] in Serum or Plasma by Immunoassay"
}, {
"code": "94504-8",
"display": "SARS-CoV-2 (COVID-19) Ab panel - Serum or Plasma by Immunoassay"
}, {
"code": "94503-0",
"display": "SARS-CoV-2 (COVID-19) Ab panel - Serum, Plasma or Blood by Rapid immunoassay"
}, {
"code": "94558-4",
"display": "SARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory specimen by Rapid immunoassay"
}, {
"code": "94562-6",
"display": "SARS-CoV-2 (COVID-19) IgA Ab [Presence] in Serum or Plasma by Immunoassay"
}, {
"code": "94768-9",
"display": "SARS-CoV-2 (COVID-19) IgA Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay"
}, {
"code": "94720-0",
"display": "SARS-CoV-2 (COVID-19) IgA Ab [Units/volume] in Serum or Plasma by Immunoassay"
}, {
"code": "95125-1",
"display": "SARS-CoV-2 (COVID-19) IgA+IgM [Presence] in Serum or Plasma by Immunoassay"
}, {
"code": "94761-4",
"display": "SARS-CoV-2 (COVID-19) IgG Ab [Presence] in DBS by Immunoassay"
}, {
"code": "94563-4",
"display": "SARS-CoV-2 (COVID-19) IgG Ab [Presence] in Serum or Plasma by Immunoassay"
}, {
"code": "94507-1",
"display": "SARS-CoV-2 (COVID-19) IgG Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay"
}, {
"code": "94505-5",
"display": "SARS-CoV-2 (COVID-19) IgG Ab [Units/volume] in Serum or Plasma by Immunoassay"
}, {
"code": "94547-7",
"display": "SARS-CoV-2 (COVID-19) IgG+IgM Ab [Presence] in Serum or Plasma by Immunoassay"
}, {
"code": "95416-4",
"display": "SARS-CoV-2 (COVID-19) IgM Ab [Presence] in DBS by Immunoassay"
}, {
"code": "94564-2",
"display": "SARS-CoV-2 (COVID-19) IgM Ab [Presence] in Serum or Plasma by Immunoassay"
}, {
"code": "94508-9",
"display": "SARS-CoV-2 (COVID-19) IgM Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay"
}, {
"code": "94506-3",
"display": "SARS-CoV-2 (COVID-19) IgM Ab [Units/volume] in Serum or Plasma by Immunoassay"
}, {
"code": "94510-5",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by NAA with probe detection"
}, {
"code": "94311-8",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N1"
}, {
"code": "94312-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N2"
}, {
"code": "94760-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Nasopharynx by NAA with probe detection"
}, {
"code": "95409-9",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Nose by NAA with probe detection"
}, {
"code": "94533-7",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by NAA with probe detection"
}, {
"code": "94756-4",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by Nucleic acid amplification using CDC primer-probe set N1"
}, {
"code": "94757-2",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by Nucleic acid amplification using CDC primer-probe set N2"
}, {
"code": "94766-3",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Serum or Plasma by NAA with probe detection"
}, {
"code": "94316-7",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by NAA with probe detection"
}, {
"code": "94307-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N1"
}, {
"code": "94308-4",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N2"
}, {
"code": "95411-5",
"display": "SARS-CoV-2 (COVID-19) neutralizing antibody [Presence] in Serum by pVNT"
}, {
"code": "95410-7",
"display": "SARS-CoV-2 (COVID-19) neutralizing antibody [Titer] in Serum by pVNT"
}, {
"code": "94644-2",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Respiratory specimen by NAA with probe detection"
}, {
"code": "94511-3",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Specimen by NAA with probe detection"
}, {
"code": "94559-2",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory specimen by NAA with probe detection"
}, {
"code": "94639-2",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Specimen by NAA with probe detection"
}, {
"code": "94646-7",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Cycle Threshold #] in Respiratory specimen by NAA with probe detection"
}, {
"code": "94645-9",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Cycle Threshold #] in Specimen by NAA with probe detection"
}, {
"code": "94534-5",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory specimen by NAA with probe detection"
}, {
"code": "94314-2",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Specimen by NAA with probe detection"
}, {
"code": "94745-7",
"display": "SARS-CoV-2 (COVID-19) RNA [Cycle Threshold #] in Respiratory specimen by NAA with probe detection"
}, {
"code": "94746-5",
"display": "SARS-CoV-2 (COVID-19) RNA [Cycle Threshold #] in Specimen by NAA with probe detection"
}, {
"code": "94819-0",
"display": "SARS-CoV-2 (COVID-19) RNA [Log #/volume] (viral load) in Specimen by NAA with probe detection"
}, {
"code": "94565-9",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with non-probe detection"
}, {
"code": "94759-8",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection"
}, {
"code": "95406-5",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Nose by NAA with probe detection"
}, {
"code": "94500-6",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by NAA with probe detection"
}, {
"code": "94845-5",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by NAA with probe detection"
}, {
"code": "94822-4",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by Sequencing"
}, {
"code": "94660-8",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Serum or Plasma by NAA with probe detection"
}, {
"code": "94309-2",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen by NAA with probe detection"
}, {
"code": "94531-1",
"display": "SARS-CoV-2 (COVID-19) RNA panel - Respiratory specimen by NAA with probe detection"
}, {
"code": "94306-8",
"display": "SARS-CoV-2 (COVID-19) RNA panel - Specimen by NAA with probe detection"
}, {
"code": "94642-6",
"display": "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Respiratory specimen by NAA with probe detection"
}, {
"code": "94643-4",
"display": "SARS-CoV-2 (COVID-19) S gene [Cycle Threshold #] in Specimen by NAA with probe detection"
}, {
"code": "94640-0",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory specimen by NAA with probe detection"
}, {
"code": "94767-1",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Serum or Plasma by NAA with probe detection"
}, {
"code": "94641-8",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Specimen by NAA with probe detection"
}, {
"code": "94764-8",
"display": "SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing"
}, {
"code": "94313-4",
"display": "SARS-like coronavirus N gene [Cycle Threshold #] in Specimen by NAA with probe detection"
}, {
"code": "94310-0",
"display": "SARS-like coronavirus N gene [Presence] in Specimen by NAA with probe detection"
}, {
"code": "94509-7",
"display": "SARS-related coronavirus E gene [Cycle Threshold #] in Specimen by NAA with probe detection"
}, {
"code": "94758-0",
"display": "SARS-related coronavirus E gene [Presence] in Respiratory specimen by NAA with probe detection"
}, {
"code": "94765-5",
"display": "SARS-related coronavirus E gene [Presence] in Serum or Plasma by NAA with probe detection"
}, {
"code": "94315-9",
"display": "SARS-related coronavirus E gene [Presence] in Specimen by NAA with probe detection"
}, {
"code": "94502-2",
"display": "SARS-related coronavirus RNA [Presence] in Respiratory specimen by NAA with probe detection"
}, {
"code": "94647-5",
"display": "SARS-related coronavirus RNA [Presence] in Specimen by NAA with probe detection"
}, {
"code": "94532-9",
"display": "SARS-related coronavirus+MERS coronavirus RNA [Presence] in Respiratory specimen by NAA with probe detection"
}, {
"code": "95942-9",
"display": "Influenza virus A and B and SARS-CoV+SARS-CoV-2 (COVID-19) Ag panel - Upper respiratory specimen by Rapid immunoassay"
}, {
"code": "95941-1",
"display": "Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory specimen by NAA with probe detection"
}, {
"code": "95380-2",
"display": "Influenza virus A and B and SARS-CoV-2 (COVID-19) and SARS-related CoV RNA panel - Respiratory specimen by NAA with probe detection"
}, {
"code": "95423-0",
"display": "Influenza virus A and B and SARS-CoV-2 (COVID-19) identified in Respiratory specimen by NAA with probe detection"
}, {
"code": "95422-2",
"display": "Influenza virus A and B and SARS-CoV-2 (COVID-19) RNA panel - Respiratory specimen by NAA with probe detection"
}, {
"code": "95971-8",
"display": "SARS CoV-2 stimulated gamma interferon [Presence] in Blood"
}, {
"code": "95974-2",
"display": "SARS CoV-2 stimulated gamma interferon panel - Blood"
}, {
"code": "95972-6",
"display": "SARS CoV-2 stimulated gamma interferon release by T-cells [Units/volume] corrected for background in Blood"
}, {
"code": "95973-4",
"display": "SARS CoV-2 stimulated gamma interferon release by T-cells [Units/volume] in Blood"
}, {
"code": "95825-6",
"display": "SARS-CoV-2 (COVID-19) Ab [Presence] in DBS by Immunoassay"
}, {
"code": "96118-5",
"display": "SARS-CoV-2 (COVID-19) Ab panel - DBS by Immunoassay"
}, {
"code": "96119-3",
"display": "SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay"
}, {
"code": "96094-8",
"display": "SARS-CoV-2 (COVID-19) and SARS-related CoV RNA panel - Respiratory specimen by NAA with probe detection"
}, {
"code": "95427-1",
"display": "SARS-CoV-2 (COVID-19) IgA Ab [Titer] in Serum or Plasma by Immunofluorescence"
}, {
"code": "95429-7",
"display": "SARS-CoV-2 (COVID-19) IgG Ab [Titer] in Serum or Plasma by Immunofluorescence"
}, {
"code": "95542-7",
"display": "SARS-CoV-2 (COVID-19) IgG+IgM Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay"
}, {
"code": "95428-9",
"display": "SARS-CoV-2 (COVID-19) IgM Ab [Titer] in Serum or Plasma by Immunofluorescence"
}, {
"code": "95521-1",
"display": "SARS-CoV-2 (COVID-19) N gene [#/volume] (viral load) in Respiratory specimen by NAA with probe detection"
}, {
"code": "95522-9",
"display": "SARS-CoV-2 (COVID-19) N gene [Log #/volume] (viral load) in Respiratory specimen by NAA with probe detection"
}, {
"code": "95425-5",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
}, {
"code": "96448-6",
"display": "SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by Nucleic acid amplification using CDC primer-probe set N1"
}, {
"code": "95824-9",
"display": "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Saliva (oral fluid) by NAA with probe detection"
}, {
"code": "96120-1",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Lower respiratory specimen by NAA with probe detection"
}, {
"code": "96091-4",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
}, {
"code": "96123-5",
"display": "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Upper respiratory specimen by NAA with probe detection"
}, {
"code": "95608-6",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by NAA with non-probe detection"
}, {
"code": "95424-8",
"display": "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by Sequencing"
}, {
"code": "95826-4",
"display": "SARS-CoV-2 (COVID-19) RNA panel - Saliva (oral fluid) by NAA with probe detection"
}, {
"code": "95609-4",
"display": "SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory specimen by Sequencing"
}, {
"code": "96603-6",
"display": "SARS-CoV-2 (COVID-19) S protein RBD neutralizing antibody [Presence] in Serum or Plasma by Immunoassay"
}, {
"code": "95970-0",
"display": "SARS-CoV-2 (COVID-19) specific TCRB gene rearrangements [Presence] in Blood by Sequencing"
}, {
"code": "96121-9",
"display": "SARS-related coronavirus E gene [Presence] in Lower respiratory specimen by NAA with probe detection"
}, {
"code": "95823-1",
"display": "SARS-related coronavirus E gene [Presence] in Saliva (oral fluid) by NAA with probe detection"
}, {
"code": "96122-7",
"display": "SARS-related coronavirus E gene [Presence] in Upper respiratory specimen by NAA with probe detection"
} ]
} ]
},
"_filename": "ValueSet-loinc-tests-covid-19.json",
"package_name": "hitstdio.tw.fhir.dcc",
"date": "2021-08-17T11:14:28+08:00",
"publisher": "Giorgio Cangioli - modified by HITSTD Lab",
"jurisdiction": [ {
"text": "Taiwan",
"coding": [ {
"code": "158",
"system": "urn:iso:std:iso:3166"
} ]
} ],
"name": "LoincCovid19Tests",
"type": null,
"experimental": null,
"resourceType": "ValueSet",
"title": "LOINC Test List (COVID-19)",
"package_version": "0.0.1",
"status": "draft",
"id": "7f7f75f8-2216-4501-9659-f72155eb2fd7",
"kind": null,
"url": "http://hitstdio.ntunhs.edu.tw/fhir/ValueSet/loinc-tests-covid-19",
"version": "0.0.1",
"contact": [ {
"telecom": [ {
"value": "mailto:hitstdio@gmail.com",
"system": "email"
} ]
} ]
}