{
"description": "Specimen contains all details regarding the specimen on which the test was carried out.",
"_filename": "HdBe-LaboratoryTestResult.Specimen.json",
"package_name": "healthdata.be.r4.cbb",
"date": null,
"derivation": "constraint",
"meta": {
"lastUpdated": "2022-02-15T16:06:37.4110489+00:00"
},
"publisher": "Healthdata.be (Sciensano)",
"fhirVersion": "4.0.1",
"name": "HdBeLaboratoryTestResultSpecimen",
"mapping": [ {
"uri": "https://zibs.nl/wiki/LaboratoryTestResult-v4.6(2020EN)",
"name": "zib LaboratoryTestResult-v4.6(2020EN)",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"uri": "https://fhir.healthdata.be/StructureDefinition/LogicalModel/HdBe-LaboratoryTestResult",
"name": "HdBe logical model LaboratoryTestResult",
"identity": "HdBe-LaboratoryTestResult"
} ],
"abstract": false,
"copyright": "Copyright and related rights waived via CC0, https://creativecommons.org/publicdomain/zero/1.0/. This does not apply to information from third parties, for example a medical terminology system. The implementer alone is responsible for identifying and obtaining any necessary licenses or authorizations to utilize third party IP in connection with the specification or otherwise.",
"type": "Specimen",
"experimental": null,
"resourceType": "StructureDefinition",
"title": "HdBe LaboratoryTestResult.Specimen",
"package_version": "0.1.0-alpha",
"status": "draft",
"id": "77b22770-1443-4e1f-98fc-349261933ce4",
"kind": "resource",
"url": "https://fhir.healthdata.be/StructureDefinition/HdBe-LaboratoryTestResult.Specimen",
"version": null,
"differential": {
"element": [ {
"id": "Specimen",
"path": "Specimen",
"alias": [ "Monster" ],
"short": "Specimen",
"mapping": [ {
"map": "NL-CM:13.1.2",
"comment": "Specimen",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"map": "specimen",
"identity": "HdBe-LaboratoryTestResult"
} ],
"definition": "The Specimen concept from the CCB HdBe-LaboratoryTestResult contains a concept for SpecimenMaterial and for Microorganism. These two concepts cannot be represented in the same Specimen resources; if there's a need to communicate both the microorganism and the sample material from which it was isolated, two instances need to be used. The instance representing the microorganism should refer to the instance respresenting the sample material using `Specimen.parent`."
}, {
"id": "Specimen.identifier",
"path": "Specimen.identifier",
"alias": [ "Monsternummer" ],
"short": "SpecimenId",
"mapping": [ {
"map": "NL-CM:13.1.15",
"comment": "SpecimenId",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"map": "specimen.specimen_id",
"identity": "HdBe-LaboratoryTestResult"
} ],
"definition": "Identification number of the material obtained, as a reference for inquiries to the source organization. In a transmural setting, this number will consist of a specimen number including the identification of the issuing organization, to be unique outside of the borders of an organization."
}, {
"id": "Specimen.type",
"path": "Specimen.type",
"alias": [ "Microorganisme" ],
"short": "SpecimenMaterial / Microorganism",
"binding": {
"strength": "required",
"valueSet": "https://fhir.healthdata.be/ValueSet/SpecimenMaterial-and-Microorganism"
},
"comment": "This Specimen resource can represent either a specimen material or a microorganism. Which of these two types is represented, is determined by this element. If there's a need to represent both the microorganism isolate and the specimen material from which it was derived, two separte resources are to be used, where the microorganism resource refers to the material resource using Specimen.parent.\r\n\r\nIf this resource represents material and is carried out on derived material (such as plasma), this element will still contain the material drawn (in this case, blood). In this case, the LOINC code will generally refer to plasma.",
"mapping": [ {
"map": "NL-CM:13.1.16",
"comment": "SpecimenMaterial",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"map": "specimen.specimen_material",
"identity": "HdBe-LaboratoryTestResult"
}, {
"map": "NL-CM:13.1.22",
"comment": "Microorganism",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"map": "specimen_microorganism",
"identity": "HdBe-LaboratoryTestResult"
} ],
"definition": "* SpecimenMaterial describes the material obtained. If the LOINC test code also implicitly describes a material, this element may not conflict with the description. If desired, this component can provide a more detailed description of the material: LOINC codes only contain the materials at a main level. This is in line with the agreements made in the IHE/Nictiz program e-Lab.\r\n* In particular in microbiological determinations the subject of the test is an isolate of a certain microorganism rather then a material. This concept provides the ability to capture information about this microorganism."
}, {
"id": "Specimen.receivedTime",
"path": "Specimen.receivedTime",
"alias": [ "AannameDatumTijd" ],
"short": "ReceivedDateTime",
"mapping": [ {
"map": "NL-CM:13.1.25",
"comment": "ReceivedDateTime",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"map": "specimen.received_date_time",
"identity": "HdBe-LaboratoryTestResult"
} ],
"definition": "Date and time that the material is handed over at the laboratory or specimen collection center."
}, {
"id": "Specimen.parent",
"path": "Specimen.parent",
"type": [ {
"code": "Reference",
"targetProfile": [ "https://fhir.healthdata.be/StructureDefinition/HdBe-LaboratoryTestResult.Specimen" ]
} ],
"comment": "When this resource represents a microorganism (that is, `Specimen.type` represents the CCB concept Microorganism and contains a code from Microorganism valueSet), this reference can be used to refer to the source material from which is was isolated. The referenced resource should have `Specimen.type` represent the CCB concept SpecimenMaterial and contain a code from the SpecimenMaterial valueSet."
}, {
"id": "Specimen.collection.collected[x]",
"path": "Specimen.collection.collected[x]",
"slicing": {
"rules": "open",
"discriminator": [ {
"path": "$this",
"type": "type"
} ]
}
}, {
"id": "Specimen.collection.collected[x]:collectedDateTime",
"path": "Specimen.collection.collected[x]",
"type": [ {
"code": "dateTime"
} ],
"mapping": [ {
"map": "specimen.collection_date_time",
"identity": "HdBe-LaboratoryTestResult"
} ],
"sliceName": "collectedDateTime"
}, {
"id": "Specimen.collection.collected[x]:collectedPeriod",
"path": "Specimen.collection.collected[x]",
"type": [ {
"code": "Period"
} ],
"alias": [ "Verzamelperiode" ],
"short": "CollectionPeriod",
"mapping": [ {
"map": "NL-CM:13.1.24",
"comment": "CollectionPeriod",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"map": "specimen.collection_period",
"identity": "HdBe-LaboratoryTestResult"
} ],
"sliceName": "collectedPeriod",
"definition": "If the material has not been collected at a single point in time but over a certain period, this period can be captured in this concept. An example is 24 hour urine."
}, {
"id": "Specimen.collection.duration",
"path": "Specimen.collection.duration",
"alias": [ "Verzamelperiode" ],
"short": "CollectionPeriod",
"mapping": [ {
"map": "NL-CM:13.1.24",
"comment": "CollectionPeriod",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"map": "specimen.collection_period",
"identity": "HdBe-LaboratoryTestResult"
} ],
"definition": "If the material has not been collected at a single point in time but over a certain period, this period can be captured in this concept. An example is 24 hour urine."
}, {
"id": "Specimen.collection.quantity",
"path": "Specimen.collection.quantity",
"alias": [ "Verzamelvolume" ],
"short": "CollectedVolume",
"mapping": [ {
"map": "NL-CM:13.1.23",
"comment": "CollectedVolume",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"map": "specimen.collected_volume",
"identity": "HdBe-LaboratoryTestResult"
} ],
"definition": "Total volume of the collected material. If it is necessary to determine the absolute amount of a particular substance in the collected material, the volume thereof must be given."
}, {
"id": "Specimen.collection.method",
"path": "Specimen.collection.method",
"alias": [ "Afnameprocedure" ],
"short": "CollectionMethod",
"binding": {
"strength": "required",
"valueSet": "https://fhir.healthdata.be/ValueSet/CollectionMethod"
},
"mapping": [ {
"map": "NL-CM:13.1.18",
"comment": "CollectionMethod",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"map": "specimen.collection_method",
"identity": "HdBe-LaboratoryTestResult"
} ],
"definition": "If relevant for the results, the method of obtaining the specimen can be entered as well."
}, {
"id": "Specimen.collection.bodySite",
"path": "Specimen.collection.bodySite",
"type": [ {
"code": "CodeableConcept",
"profile": [ "https://fhir.healthdata.be/StructureDefinition/HdBe-AnatomicalLocation" ]
} ],
"alias": [ "AnatomischeLocatie" ],
"short": "AnatomicalLocation",
"binding": {
"strength": "required",
"valueSet": "https://fhir.healthdata.be/ValueSet/Location"
},
"mapping": [ {
"map": "NL-CM:13.1.36",
"comment": "AnatomicalLocation",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"map": "specimen.anatomical_location",
"identity": "HdBe-LaboratoryTestResult"
} ],
"definition": "Anatomic location where the material is collected, e.g. elbow"
}, {
"id": "Specimen.container.identifier",
"path": "Specimen.container.identifier",
"alias": [ "Monstervolgnummer" ],
"short": "SpecimenNumberExtension",
"mapping": [ {
"map": "NL-CM:13.1.20",
"comment": "SpecimenNumberExtension",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"map": "specimen.specimen_number_extension",
"identity": "HdBe-LaboratoryTestResult"
} ],
"definition": "The specimen number extension is used when the collected material is distributed from the original tube or container across multiple tubes. In combination with the specimen Id the extension yield a unique identification of the tube or container"
}, {
"id": "Specimen.container.type",
"path": "Specimen.container.type",
"binding": {
"strength": "preferred",
"valueSet": "https://fhir.healthdata.be/ValueSet/ContainerType"
},
"mapping": [ {
"map": "specimen.container_type",
"identity": "HdBe-LaboratoryTestResult"
} ]
}, {
"id": "Specimen.note.text",
"path": "Specimen.note.text",
"alias": [ "Toelichting" ],
"short": "Comment",
"mapping": [ {
"map": "NL-CM:13.1.19",
"comment": "Comment",
"identity": "zib-laboratorytestresult-v4.6-2020EN"
}, {
"map": "specimen.comment",
"identity": "HdBe-LaboratoryTestResult"
} ],
"definition": "Comments on the specimen , such as drawing material after a (glucose) stimulus or taking medicine."
} ]
},
"contact": [ {
"name": "Healthdata.be (Sciensano)",
"telecom": [ {
"use": "work",
"value": "fhir.healthdata@sciensano.be",
"system": "email"
} ]
} ],
"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Specimen"
}