description: This profile defines a phenotype representation
package_name: hl7.fhir.uv.phenomics-exchange
derivation: constraint
name: ObservationPhenotype
type: Observation
elements:
  code: {short: A code representing the phenotype, mustSupport: true, index: 0}
  value:
    short: An assertion for the presence or absence of the phenotype
    mustSupport: true
    choices: [valueCodeableConcept]
    index: 2
  valueCodeableConcept: {type: CodeableConcept, short: An assertion for the presence or absence of the phenotype, mustSupport: true, choiceOf: value, index: 3}
  component:
    short: Phenotype components
    index: 4
    slicing:
      rules: open
      discriminator:
      - {path: code, type: value}
      min: null
      slices:
        age-resolution-range:
          match:
            code:
              coding:
              - {code: AGE_RESOLUTION_RANGE, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
          schema:
            short: The age of resolution since birth, in the form of a range of time
            index: 35
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: AGE_RESOLUTION_RANGE, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
                index: 36
              value:
                choices: [valueRange]
                index: 38
              valueRange: {type: Range, choiceOf: value, index: 39}
            required: [valueRange, value]
        qualifiers:
          match:
            code:
              coding:
              - {code: QUALIFIER, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
          schema:
            short: Phenotype qualifiers
            array: true
            index: 25
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: QUALIFIER, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
                index: 26
              value:
                choices: [valueCodeableConcept]
                index: 28
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 29}
            required: [value, valueCodeableConcept]
        age-onset-range:
          match:
            code:
              coding:
              - {code: AGE_ONSET_RANGE, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
          schema:
            short: The age of onset since birth, in the form of a range of time
            index: 10
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: AGE_ONSET_RANGE, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
                index: 11
              value:
                choices: [valueRange]
                index: 13
              valueRange: {type: Range, choiceOf: value, index: 14}
            required: [valueRange, value]
        age-resolution-coded:
          match:
            code:
              coding:
              - {code: AGE_RESOLUTION_CODED, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
          schema:
            short: The age of resolution since birth, in the form of a coded concept
            index: 40
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: AGE_RESOLUTION_CODED, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
                index: 41
              value:
                choices: [valueCodeableConcept]
                index: 43
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 44}
            required: [value, valueCodeableConcept]
        age-resolution-gestational:
          match:
            code:
              coding:
              - {code: AGE_RESOLUTION_GESTATIONAL, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
          schema:
            short: The gestational age of resolution, in the form of a quantity of time
            index: 45
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: AGE_RESOLUTION_GESTATIONAL, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
                index: 46
              value:
                choices: [valueQuantity]
                index: 48
              valueQuantity: {type: Quantity, choiceOf: value, index: 49}
            required: [value, valueQuantity]
        age-onset-gestational:
          match:
            code:
              coding:
              - {code: AGE_ONSET_GESTATIONAL, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
          schema:
            short: The gestational age of onset, in the form of a quantity of time
            index: 20
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: AGE_ONSET_GESTATIONAL, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
                index: 21
              value:
                choices: [valueQuantity]
                index: 23
              valueQuantity: {type: Quantity, choiceOf: value, index: 24}
            required: [value, valueQuantity]
        age-resolution:
          match:
            code:
              coding:
              - {code: AGE_RESOLUTION, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
          schema:
            short: The age of resolution since birth, in the form of a quantity of time
            index: 30
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: AGE_RESOLUTION, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
                index: 31
              value:
                choices: [valueQuantity]
                index: 33
              valueQuantity: {type: Quantity, choiceOf: value, index: 34}
            required: [value, valueQuantity]
        age-onset-coded:
          match:
            code:
              coding:
              - {code: AGE_ONSET_CODED, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
          schema:
            short: The age of onset since birth, in the form of a coded concept
            index: 15
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: AGE_ONSET_CODED, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
                index: 16
              value:
                choices: [valueCodeableConcept]
                index: 18
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 19}
            required: [value, valueCodeableConcept]
        age-onset:
          match:
            code:
              coding:
              - {code: AGE_ONSET, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
          schema:
            short: The age of onset since birth, in the form of a quantity of time
            index: 5
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: AGE_ONSET, system: 'http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/temporary-phenotype-component'}
                index: 6
              value:
                choices: [valueQuantity]
                index: 8
              valueQuantity: {type: Quantity, choiceOf: value, index: 9}
            required: [value, valueQuantity]
package_version: 1.0.0-ballot
class: profile
kind: resource
url: http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/phenotype
base: http://hl7.org/fhir/StructureDefinition/Observation
version: 1.0.0-ballot
required: [value, valueCodeableConcept]