description: Basisiprofil zur Abbildung einer MII Bioprobe. Nicht zur direkten Implementierung gedacht, Module leiten bei Bedarf eigene Profile von diesem Profil ab. package_name: de.medizininformatikinitiative.kerndatensatz.biobank derivation: constraint name: ProfileSpecimenBioprobeCore type: Specimen elements: request: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Entnahme-ID} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Collection ID} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Der Identifier der Probenentnahme.} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: The identifier for the specimen collection.} mustSupport: true index: 8 processing: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Probenverarbeitung} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Specimen processing} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Details zur Verarbeitung der Probe, einschließlich Prozeduren und Verarbeitungszeitraum.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: 'Details about the processing of the specimen, including procedures and processing period.'} mustSupport: true index: 25 extensions: temperaturbedingungen: {url: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen', min: 1, max: 1, type: Extension, mustSupport: true, index: 27} elements: extension: index: 26 slicing: rules: open ordered: false discriminator: - {path: url, type: value} min: 1 slices: temperaturbedingungen: match: {url: null} schema: {type: Extension, mustSupport: true, url: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen', index: 27} min: 1 max: 1 procedure: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Verarbeitungstyp} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Processing procedure} binding: {strength: example, valueSet: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/ValueSet/sct-lab-procedure'} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Die angewendete Prozedur zur Verarbeitung der Probe, z.B. Zentrifugation.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: 'The procedure applied to process the specimen, e.g. centrifugation.'} mustSupport: true index: 28 elements: coding: index: 29 slicing: rules: open discriminator: - {path: $this.system, type: pattern} min: 1 slices: sct: match: $this: {system: null} schema: mustSupport: true array: true min: 1 _required: true index: 30 elements: system: pattern: {type: Uri, value: 'http://snomed.info/sct'} index: 31 required: [coding] additive: type: Reference _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Additive bei Verarbeitung} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Processing additives} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Zusatzstoffe, die während der Probenverarbeitung verwendet wurden, z.B. Fixierungsmittel.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: 'Additives used during the specimen processing, e.g. fixatives.'} mustSupport: true refers: ['https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Substance'] index: 32 time: mustSupport: true choices: [] index: 34 slicing: rules: open ordered: false discriminator: - {path: $this, type: type} min: null slices: timePeriod: match: {} schema: _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Der Zeitraum, in dem die Probe verarbeitet wurde.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: The time period during which the specimen was processed.} mustSupport: true choices: [timePeriod] _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Verarbeitungszeitraum} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Processing period} index: 36 min: 0 max: 1 timePeriod: _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Der Zeitraum, in dem die Probe verarbeitet wurde.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: The time period during which the specimen was processed.} type: Period mustSupport: true _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Verarbeitungszeitraum} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Processing period} choiceOf: time index: 37 slicing: slices: timePeriod: match: {} schema: _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Der Zeitraum, in dem die Probe verarbeitet wurde.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: The time period during which the specimen was processed.} type: Period mustSupport: true _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Verarbeitungszeitraum} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Processing period} choiceOf: time index: 37 min: 0 max: 1 time[x]: elements: start: {mustSupport: true, index: 38} end: {mustSupport: true, index: 39} required: [extension, procedure] slicing: rules: open discriminator: - {path: $this.procedure.coding, type: pattern} min: null slices: lagerprozess: match: $this: procedure: {coding: null} schema: mustSupport: true array: true index: 40 extensions: temperaturbedingungen: {url: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen', min: 1, max: 1, type: Extension, mustSupport: true, index: 41} elements: extension: type: Extension mustSupport: true url: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen index: 41 slicing: slices: temperaturbedingungen: match: {} schema: {type: Extension, mustSupport: true, url: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen', index: 41} min: 1 max: 1 procedure: elements: coding: pattern: type: Coding value: {code: '1186936003', system: 'http://snomed.info/sct'} index: 42 time: choices: [timePeriod] index: 47 slicing: slices: timePeriod: match: {} schema: choices: [timePeriod] index: 47 timePeriod: type: Period choiceOf: time index: 48 slicing: slices: timePeriod: match: {} schema: {type: Period, choiceOf: time, index: 48} time[x]: elements: start: {index: 49} required: [start] required: [timePeriod, time] parent: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Ist gewonnen aus} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Derived from} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Referenz auf eine übergeordnete Probe, aus der diese Probe gewonnen wurde.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Reference to a parent specimen from which this specimen was derived.} mustSupport: true index: 7 type: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Probenart} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Specimen type} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Die Art der Probe, codiert in SNOMED CT.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: 'The type of the specimen, encoded as SNOMED CT code.'} mustSupport: true index: 2 elements: coding: index: 3 slicing: rules: open discriminator: - {path: $this.system, type: pattern} min: 1 slices: sct: match: $this: {system: null} schema: binding: {strength: extensible, valueSet: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/ValueSet/probenart'} array: true min: 1 _required: true index: 4 elements: system: pattern: {type: Uri, value: 'http://snomed.info/sct'} index: 5 required: [coding] note: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Projektnutzung} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Project usage} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Freitextangabe zur Verwendung der Probe in spezifischen Projekten.} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Free-text information about the use of the specimen in specific projects.} mustSupport: true index: 59 status: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Verfügbarkeitsstatus} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Availability status} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Der Status der Probe in Bezug auf die Verfügbarkeit für Forschung.} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: The status of the specimen in terms of its availability for research.} mustSupport: true index: 1 container: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Probenbehältnis} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Specimen container} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Informationen über den Behälter, in dem die Probe aufbewahrt wird.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Information about the container in which the specimen is stored.} mustSupport: true index: 50 elements: type: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Containertyp} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Container type} binding: {strength: extensible, valueSet: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/ValueSet/containertyp'} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Der Typ des Probencontainers, der für diese Probe verwendet wurde.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: The type of container used for this specimen.} mustSupport: true index: 51 capacity: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Containerkapazität} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Capacity} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Die maximale Kapazität des Containers, der für die Probe verwendet wurde.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: The maximum capacity of the container used for the specimen.} mustSupport: true index: 52 specimenQuantity: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Probenmenge} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Specimen quantity} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Die Menge des gesammelten Materials.} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: The amount of material collected.} mustSupport: true index: 53 additive: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Additiv} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Additives} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Zusatzstoffe, die im Probenbehälter enthalten sind z.B. wie Konservierungsmittel.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Additives contained in the specimen container e.g. preservatives.} mustSupport: true choices: [] index: 55 slicing: rules: open ordered: false discriminator: - {path: $this, type: type} min: null slices: additiveReference: match: {} schema: choices: [additiveReference] index: 57 min: 0 max: 1 additiveReference: type: Reference choiceOf: additive refers: ['https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Substance'] index: 58 slicing: slices: additiveReference: match: {} schema: type: Reference choiceOf: additive refers: ['https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Substance'] index: 58 min: 0 max: 1 required: [type] identifier: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Proben-ID} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Specimen ID} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Einrichtungsinterner Identifier der Probe.} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Internal identifier of the specimen at the institution.} mustSupport: true index: 0 collection: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Probenentnahme} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Specimen sampling} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Informationen über den Prozess der Probenentnahme, einschließlich Entnahmezeitpunkt und -stelle.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: 'Information about the specimen collection process, including collection time and site.'} mustSupport: true index: 9 extensions: einstellungBlutversorgung: {url: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/EinstellungBlutversorgung', min: 0, max: 1, type: Extension, mustSupport: true, index: 11} elements: extension: index: 10 slicing: rules: open ordered: false discriminator: - {path: url, type: value} min: null slices: einstellungBlutversorgung: match: {url: null} schema: {type: Extension, mustSupport: true, url: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/EinstellungBlutversorgung', index: 11} min: 0 max: 1 collected: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Entnahmezeitpunkt} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Sampling time} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Der Zeitpunkt, zu dem die Probe entnommen oder gesammelt wurde.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: The time when the specimen was collected or obtained.} mustSupport: true choices: [] index: 13 bodySite: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Anatomische Lokalisation} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: anatomical localisation} constraint: mii-bb-1: {human: Bei der Angabe der Entnahmestelle muss ein ICD-O-3 Topographiecode oder ein SNOMED CT Code angegeben werden., source: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/SpecimenCore', severity: error, expression: 'coding.where(system = ''http://snomed.info/sct'' or system = ''http://terminology.hl7.org/CodeSystem/icd-o-3'').exists()'} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Die Körperstelle, von der die Probe entnommen wurde gemäß icd-o-3.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: The body site from which the specimen was collected according to icd-o-3.} mustSupport: true index: 14 elements: coding: index: 15 slicing: rules: open discriminator: - {path: $this.system, type: pattern} min: null slices: sct: match: $this: {system: null} schema: binding: {strength: required, valueSet: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/ValueSet/sct-body-structures'} mustSupport: true index: 16 elements: system: pattern: {type: Uri, value: 'http://snomed.info/sct'} index: 17 icd-o-3: match: $this: {system: null} schema: binding: {strength: required, valueSet: 'https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/ValueSet/icd-o-3-topography'} mustSupport: true index: 18 elements: system: pattern: {type: Uri, value: 'http://terminology.hl7.org/CodeSystem/icd-o-3'} index: 19 fastingStatus: _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Nüchternstatus} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Fasting status} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: Der Nüchternstatus der Person zum Zeitpunkt der Probenentnahme.} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: The fasting status of the person at the time the specimen was collected.} mustSupport: true choices: [] index: 21 slicing: rules: open ordered: false discriminator: - {path: $this, type: type} min: null slices: fastingStatusCodeableConcept: match: {} schema: choices: [fastingStatusCodeableConcept] index: 23 min: 0 max: 1 fastingStatusCodeableConcept: type: CodeableConcept choiceOf: fastingStatus index: 24 slicing: slices: fastingStatusCodeableConcept: match: {} schema: {type: CodeableConcept, choiceOf: fastingStatus, index: 24} min: 0 max: 1 required: [collected] subject: type: Reference _short: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Patient:in'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Patient} _definition: extension: - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: de-DE} - {url: content, valueString: 'Verweis auf die Person, von der die Probe stammt.'} - url: http://hl7.org/fhir/StructureDefinition/translation extension: - {url: lang, valueCode: en-US} - {url: content, valueString: Reference to the person from whom the specimen was collected.} mustSupport: true refers: ['http://hl7.org/fhir/StructureDefinition/Patient'] index: 6 package_version: 2025.0.1 class: profile kind: resource url: https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/SpecimenCore base: http://hl7.org/fhir/StructureDefinition/Specimen version: 2025.0.1 required: [collection, status, subject, type]