{
"description": "Logical Model for a single entry in the DNPM DIP MTB Patient Record ngsReports array",
"_filename": "StructureDefinition-dnpm-lm-ngs-report.json",
"package_name": "de.medizininformatikinitiative.kerndatensatz.mtb",
"date": "2026-09-15T17:39:31+00:00",
"derivation": "specialization",
"publisher": "Medizininformatik-Initiative",
"fhirVersion": "4.0.1",
"jurisdiction": [ {
"coding": [ {
"code": "DE",
"system": "urn:iso:std:iso:3166",
"display": "Germany"
} ]
} ],
"name": "DNPM_LM_NGSReport",
"abstract": false,
"type": "https://dnpm-dip.net/fhir/StructureDefinition/dnpm-lm-ngs-report",
"experimental": null,
"resourceType": "StructureDefinition",
"title": "DNPM NGS Report",
"package_version": "2027.0.0-ballot.1",
"snapshot": {
"element": [ {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report",
"min": 0,
"definition": "Logical Model for a single entry in the DNPM DIP MTB Patient Record ngsReports array",
"isModifier": false,
"short": "DNPM NGS Report",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"max": "*",
"id": "dnpm-lm-ngs-report",
"condition": [ "ele-1" ],
"base": {
"max": "*",
"min": 0,
"path": "Element"
}
}, {
"path": "dnpm-lm-ngs-report.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
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"rules": "open",
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"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"id": "dnpm-lm-ngs-report.dnpmId",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.dnpmId"
},
"path": "dnpm-lm-ngs-report.dnpmId",
"type": [ {
"code": "string"
} ],
"short": "NGS Report UUID (DNPM internal ID)",
"definition": "NGS Report UUID (DNPM internal ID)"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.patient",
"min": 1,
"definition": "Patient reference",
"short": "Patient reference",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.patient",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.patient"
}
}, {
"path": "dnpm-lm-ngs-report.patient.id",
"min": 1,
"definition": "Patient ID",
"isModifier": false,
"short": "Patient ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.patient.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.patient.extension",
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"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.patient.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.patient.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.patient.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.patient.type",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.patient.type"
},
"path": "dnpm-lm-ngs-report.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type (Patient)",
"definition": "Reference type (Patient)"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.specimen",
"min": 1,
"definition": "Tumor specimen reference",
"short": "Tumor specimen reference",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.specimen",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.specimen"
}
}, {
"path": "dnpm-lm-ngs-report.specimen.id",
"min": 1,
"definition": "Specimen ID",
"isModifier": false,
"short": "Specimen ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.specimen.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.specimen.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.specimen.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.specimen.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.specimen.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.specimen.type",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.specimen.type"
},
"path": "dnpm-lm-ngs-report.specimen.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type (TumorSpecimen)",
"definition": "Reference type (TumorSpecimen)"
}, {
"id": "dnpm-lm-ngs-report.issuedOn",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.issuedOn"
},
"path": "dnpm-lm-ngs-report.issuedOn",
"type": [ {
"code": "string"
} ],
"short": "Report issue date (YYYY-MM-DD)",
"definition": "Report issue date (YYYY-MM-DD)"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.type",
"min": 1,
"definition": "NGS analysis type (e.g. exome, panel)",
"short": "NGS analysis type (e.g. exome, panel)",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.type",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.type"
}
}, {
"path": "dnpm-lm-ngs-report.type.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.type.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
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"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.type.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
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"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
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"discriminator": [ {
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},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.type.extension",
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"base": {
"max": "*",
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"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.type.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.type.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.type.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.type.code"
},
"path": "dnpm-lm-ngs-report.type.code",
"type": [ {
"code": "string"
} ],
"short": "Type code",
"definition": "Type code"
}, {
"id": "dnpm-lm-ngs-report.type.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.type.display"
},
"path": "dnpm-lm-ngs-report.type.display",
"type": [ {
"code": "string"
} ],
"short": "Type display",
"definition": "Type display"
}, {
"id": "dnpm-lm-ngs-report.type.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.type.system"
},
"path": "dnpm-lm-ngs-report.type.system",
"type": [ {
"code": "string"
} ],
"short": "Type system URI",
"definition": "Type system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.metadata",
"min": 0,
"definition": "NGS run metadata",
"short": "NGS run metadata",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.metadata",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata"
}
}, {
"path": "dnpm-lm-ngs-report.metadata.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.metadata.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.metadata.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
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"mapping": [ {
"map": "n/a",
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} ],
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"rules": "open",
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"discriminator": [ {
"path": "url",
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} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.metadata.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.metadata.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
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"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.metadata.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.metadata.referenceGenome",
"min": 0,
"definition": "Reference genome used",
"short": "Reference genome used",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.metadata.referenceGenome",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.referenceGenome"
}
}, {
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
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} ],
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
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"map": "n/a",
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"rules": "open",
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"discriminator": [ {
"path": "url",
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},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.code"
},
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.code",
"type": [ {
"code": "string"
} ],
"short": "Genome build code (e.g. GRCh38)",
"definition": "Genome build code (e.g. GRCh38)"
}, {
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.display"
},
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.display",
"type": [ {
"code": "string"
} ],
"short": "Genome build display",
"definition": "Genome build display"
}, {
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.system"
},
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.system",
"type": [ {
"code": "string"
} ],
"short": "Genome build system URI",
"definition": "Genome build system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.metadata.sequencer",
"min": 0,
"definition": "Sequencer instrument",
"short": "Sequencer instrument",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.metadata.sequencer",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.sequencer"
}
}, {
"path": "dnpm-lm-ngs-report.metadata.sequencer.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
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"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.metadata.sequencer.id",
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"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
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}, {
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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} ],
"path": "dnpm-lm-ngs-report.metadata.sequencer.extension",
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},
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"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.metadata.sequencer.extension",
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"base": {
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"path": "Element.extension"
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}, {
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}, {
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} ],
"path": "dnpm-lm-ngs-report.metadata.sequencer.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
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"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.metadata.sequencer.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.metadata.sequencer.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.sequencer.code"
},
"path": "dnpm-lm-ngs-report.metadata.sequencer.code",
"type": [ {
"code": "string"
} ],
"short": "Sequencer code",
"definition": "Sequencer code"
}, {
"id": "dnpm-lm-ngs-report.metadata.sequencer.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.sequencer.display"
},
"path": "dnpm-lm-ngs-report.metadata.sequencer.display",
"type": [ {
"code": "string"
} ],
"short": "Sequencer display",
"definition": "Sequencer display"
}, {
"id": "dnpm-lm-ngs-report.metadata.sequencer.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.sequencer.system"
},
"path": "dnpm-lm-ngs-report.metadata.sequencer.system",
"type": [ {
"code": "string"
} ],
"short": "Sequencer system URI",
"definition": "Sequencer system URI"
}, {
"id": "dnpm-lm-ngs-report.metadata.kitManufacturer",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.kitManufacturer"
},
"path": "dnpm-lm-ngs-report.metadata.kitManufacturer",
"type": [ {
"code": "string"
} ],
"short": "Kit manufacturer name",
"definition": "Kit manufacturer name"
}, {
"id": "dnpm-lm-ngs-report.metadata.kitType",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.kitType"
},
"path": "dnpm-lm-ngs-report.metadata.kitType",
"type": [ {
"code": "string"
} ],
"short": "Kit type name",
"definition": "Kit type name"
}, {
"id": "dnpm-lm-ngs-report.metadata.pipeline",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.pipeline"
},
"path": "dnpm-lm-ngs-report.metadata.pipeline",
"type": [ {
"code": "string"
} ],
"short": "Bioinformatics pipeline identifier",
"definition": "Bioinformatics pipeline identifier"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent",
"min": 0,
"definition": "Tumor cell content metadata estimate",
"short": "Tumor cell content metadata estimate",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent"
}
}, {
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
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},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"constraint": [ {
"key": "ele-1",
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"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method",
"min": 0,
"definition": "Estimation method",
"short": "Estimation method",
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"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method"
}
}, {
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.id",
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"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
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"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.id",
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"max": "1",
"min": 0,
"path": "Element.id"
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"isSummary": false
}, {
"constraint": [ {
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"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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} ],
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.extension",
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"isModifier": false,
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"rules": "open",
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},
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"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
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"isSummary": false
}, {
"constraint": [ {
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"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.code"
},
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.code",
"type": [ {
"code": "string"
} ],
"short": "Method code",
"definition": "Method code"
}, {
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.display"
},
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.display",
"type": [ {
"code": "string"
} ],
"short": "Method display",
"definition": "Method display"
}, {
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.system"
},
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.system",
"type": [ {
"code": "string"
} ],
"short": "Method system URI",
"definition": "Method system URI"
}, {
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.value",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.value"
},
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.value",
"type": [ {
"code": "decimal"
} ],
"short": "Tumor cell content fraction (0.0 – 1.0)",
"definition": "Tumor cell content fraction (0.0 – 1.0)"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results",
"min": 1,
"definition": "NGS analysis results",
"short": "NGS analysis results",
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"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results"
}
}, {
"path": "dnpm-lm-ngs-report.results.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
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"severity": "error",
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}, {
"key": "ext-1",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
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} ],
"path": "dnpm-lm-ngs-report.results.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
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"map": "n/a",
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"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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"severity": "error",
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} ],
"path": "dnpm-lm-ngs-report.results.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
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"max": "*",
"id": "dnpm-lm-ngs-report.results.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"constraint": [ {
"key": "ele-1",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.tumorCellContent",
"min": 0,
"definition": "Bioinformatically determined tumor cell content",
"short": "Bioinformatically determined tumor cell content",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tumorCellContent",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.tumorCellContent"
}
}, {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.id",
"min": 1,
"definition": "Result ID",
"isModifier": false,
"short": "Result ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
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}, {
"key": "ext-1",
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} ],
"path": "dnpm-lm-ngs-report.results.tumorCellContent.extension",
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},
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"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
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"isSummary": false
}, {
"constraint": [ {
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}, {
"key": "ext-1",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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} ],
"path": "dnpm-lm-ngs-report.results.tumorCellContent.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
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"map": "N/A",
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"type": [ {
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} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.modifierExtension",
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"base": {
"max": "*",
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"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
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}, {
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"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient",
"min": 1,
"definition": "Patient reference",
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"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient"
}
}, {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.id",
"min": 1,
"definition": "Patient ID",
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"short": "Patient ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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} ],
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.extension",
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"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
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"slicing": {
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},
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} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient.extension",
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"base": {
"max": "*",
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"path": "Element.extension"
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"isSummary": false
}, {
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}, {
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"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient.type",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.type"
},
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen",
"min": 1,
"definition": "Specimen reference",
"short": "Specimen reference",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen"
}
}, {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.id",
"min": 1,
"definition": "Specimen ID",
"isModifier": false,
"short": "Specimen ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.type",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.type"
},
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method",
"min": 1,
"definition": "Determination method",
"short": "Determination method",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method"
}
}, {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.code"
},
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.code",
"type": [ {
"code": "string"
} ],
"short": "Method code",
"definition": "Method code"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.display"
},
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.display",
"type": [ {
"code": "string"
} ],
"short": "Method display",
"definition": "Method display"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.system"
},
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.system",
"type": [ {
"code": "string"
} ],
"short": "Method system URI",
"definition": "Method system URI"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.value",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.value"
},
"path": "dnpm-lm-ngs-report.results.tumorCellContent.value",
"type": [ {
"code": "decimal"
} ],
"short": "Tumor cell content fraction (0.0 – 1.0)",
"definition": "Tumor cell content fraction (0.0 – 1.0)"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.tmb",
"min": 0,
"definition": "Tumor Mutational Burden",
"short": "Tumor Mutational Burden",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tmb",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.tmb"
}
}, {
"path": "dnpm-lm-ngs-report.results.tmb.id",
"min": 1,
"definition": "TMB result ID",
"isModifier": false,
"short": "TMB result ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tmb.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tmb.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tmb.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.patient",
"min": 1,
"definition": "Patient reference",
"short": "Patient reference",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tmb.patient",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.patient"
}
}, {
"path": "dnpm-lm-ngs-report.results.tmb.patient.id",
"min": 1,
"definition": "Patient ID",
"isModifier": false,
"short": "Patient ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tmb.patient.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.patient.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tmb.patient.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.patient.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tmb.patient.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.tmb.patient.type",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.patient.type"
},
"path": "dnpm-lm-ngs-report.results.tmb.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.specimen",
"min": 1,
"definition": "Specimen reference",
"short": "Specimen reference",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tmb.specimen",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.specimen"
}
}, {
"path": "dnpm-lm-ngs-report.results.tmb.specimen.id",
"min": 1,
"definition": "Specimen ID",
"isModifier": false,
"short": "Specimen ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tmb.specimen.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.specimen.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tmb.specimen.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.specimen.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tmb.specimen.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.tmb.specimen.type",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.specimen.type"
},
"path": "dnpm-lm-ngs-report.results.tmb.specimen.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.value",
"min": 1,
"definition": "TMB quantity",
"short": "TMB quantity",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tmb.value",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.value"
}
}, {
"path": "dnpm-lm-ngs-report.results.tmb.value.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tmb.value.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.value.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tmb.value.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.value.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tmb.value.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.tmb.value.value",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.value.value"
},
"path": "dnpm-lm-ngs-report.results.tmb.value.value",
"type": [ {
"code": "decimal"
} ],
"short": "Numeric TMB value",
"definition": "Numeric TMB value"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.value.unit",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.value.unit"
},
"path": "dnpm-lm-ngs-report.results.tmb.value.unit",
"type": [ {
"code": "string"
} ],
"short": "Unit (e.g. Mutations per megabase)",
"definition": "Unit (e.g. Mutations per megabase)"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.interpretation",
"min": 0,
"definition": "TMB interpretation",
"short": "TMB interpretation",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tmb.interpretation",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.tmb.interpretation"
}
}, {
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.code"
},
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.code",
"type": [ {
"code": "string"
} ],
"short": "Interpretation code (e.g. high)",
"definition": "Interpretation code (e.g. high)"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.display"
},
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.display",
"type": [ {
"code": "string"
} ],
"short": "Interpretation display",
"definition": "Interpretation display"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.system"
},
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.system",
"type": [ {
"code": "string"
} ],
"short": "Interpretation system URI",
"definition": "Interpretation system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.brcaness",
"min": 0,
"definition": "BRCAness score",
"short": "BRCAness score",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.brcaness",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.brcaness"
}
}, {
"path": "dnpm-lm-ngs-report.results.brcaness.id",
"min": 1,
"definition": "BRCAness result ID",
"isModifier": false,
"short": "BRCAness result ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.brcaness.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.brcaness.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.brcaness.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.brcaness.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.brcaness.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.brcaness.patient",
"min": 1,
"definition": "Patient reference",
"short": "Patient reference",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.brcaness.patient",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.patient"
}
}, {
"path": "dnpm-lm-ngs-report.results.brcaness.patient.id",
"min": 1,
"definition": "Patient ID",
"isModifier": false,
"short": "Patient ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.brcaness.patient.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.brcaness.patient.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.brcaness.patient.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.brcaness.patient.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.brcaness.patient.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.brcaness.patient.type",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.patient.type"
},
"path": "dnpm-lm-ngs-report.results.brcaness.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.brcaness.specimen",
"min": 1,
"definition": "Specimen reference",
"short": "Specimen reference",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.brcaness.specimen",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.specimen"
}
}, {
"path": "dnpm-lm-ngs-report.results.brcaness.specimen.id",
"min": 1,
"definition": "Specimen ID",
"isModifier": false,
"short": "Specimen ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.brcaness.specimen.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.brcaness.specimen.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.brcaness.specimen.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.brcaness.specimen.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.brcaness.specimen.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.brcaness.specimen.type",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.specimen.type"
},
"path": "dnpm-lm-ngs-report.results.brcaness.specimen.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"id": "dnpm-lm-ngs-report.results.brcaness.value",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.value"
},
"path": "dnpm-lm-ngs-report.results.brcaness.value",
"type": [ {
"code": "decimal"
} ],
"short": "BRCAness score (0.0 – 1.0)",
"definition": "BRCAness score (0.0 – 1.0)"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange",
"min": 0,
"definition": "Confidence range",
"short": "Confidence range",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.brcaness.confidenceRange",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange"
}
}, {
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.min",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.min"
},
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.min",
"type": [ {
"code": "decimal"
} ],
"short": "Minimum confidence value",
"definition": "Minimum confidence value"
}, {
"id": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.max",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.max"
},
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.max",
"type": [ {
"code": "decimal"
} ],
"short": "Maximum confidence value",
"definition": "Maximum confidence value"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.hrdScore",
"min": 0,
"definition": "Homologous Recombination Deficiency Score",
"short": "Homologous Recombination Deficiency Score",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.hrdScore",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.hrdScore"
}
}, {
"path": "dnpm-lm-ngs-report.results.hrdScore.id",
"min": 1,
"definition": "HRD result ID",
"isModifier": false,
"short": "HRD result ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.hrdScore.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"xpath": "@value|f:*|h:div",
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"severity": "error",
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}, {
"key": "ext-1",
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"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
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} ],
"path": "dnpm-lm-ngs-report.results.hrdScore.extension",
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"isModifier": false,
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},
"type": [ {
"code": "Extension"
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"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.hrdScore.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.hrdScore.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
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"type": [ {
"code": "Extension"
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"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.hrdScore.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
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}, {
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"key": "ele-1",
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"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.hrdScore.patient",
"min": 1,
"definition": "Patient reference",
"short": "Patient reference",
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"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.hrdScore.patient",
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"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.patient"
}
}, {
"path": "dnpm-lm-ngs-report.results.hrdScore.patient.id",
"min": 1,
"definition": "Patient ID",
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"short": "Patient ID",
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"map": "n/a",
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} ],
"type": [ {
"code": "string"
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"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.hrdScore.patient.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
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}, {
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} ],
"path": "dnpm-lm-ngs-report.results.hrdScore.patient.extension",
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"max": "*",
"id": "dnpm-lm-ngs-report.results.hrdScore.patient.extension",
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"base": {
"max": "*",
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"path": "Element.extension"
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}, {
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"expression": "hasValue() or (children().count() > id.count())"
}, {
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"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.hrdScore.patient.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
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"map": "N/A",
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"type": [ {
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"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.hrdScore.patient.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.hrdScore.patient.type",
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"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.patient.type"
},
"path": "dnpm-lm-ngs-report.results.hrdScore.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.hrdScore.specimen",
"min": 1,
"definition": "Specimen reference",
"short": "Specimen reference",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.hrdScore.specimen",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.specimen"
}
}, {
"path": "dnpm-lm-ngs-report.results.hrdScore.specimen.id",
"min": 1,
"definition": "Specimen ID",
"isModifier": false,
"short": "Specimen ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.hrdScore.specimen.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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}, {
"key": "ext-1",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.hrdScore.specimen.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
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"max": "*",
"id": "dnpm-lm-ngs-report.results.hrdScore.specimen.extension",
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"base": {
"max": "*",
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"path": "Element.extension"
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}, {
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}, {
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} ],
"path": "dnpm-lm-ngs-report.results.hrdScore.specimen.modifierExtension",
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"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
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"id": "dnpm-lm-ngs-report.results.hrdScore.specimen.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
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}, {
"id": "dnpm-lm-ngs-report.results.hrdScore.specimen.type",
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"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.specimen.type"
},
"path": "dnpm-lm-ngs-report.results.hrdScore.specimen.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
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}, {
"id": "dnpm-lm-ngs-report.results.hrdScore.value",
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"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.value"
},
"path": "dnpm-lm-ngs-report.results.hrdScore.value",
"type": [ {
"code": "decimal"
} ],
"short": "HRD composite score",
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}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
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} ],
"path": "dnpm-lm-ngs-report.results.hrdScore.components",
"min": 0,
"definition": "HRD component scores",
"short": "HRD component scores",
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"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.hrdScore.components",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.hrdScore.components"
}
}, {
"path": "dnpm-lm-ngs-report.results.hrdScore.components.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
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"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.hrdScore.components.id",
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"max": "1",
"min": 0,
"path": "Element.id"
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"isSummary": false
}, {
"constraint": [ {
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}, {
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} ],
"path": "dnpm-lm-ngs-report.results.hrdScore.components.extension",
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"id": "dnpm-lm-ngs-report.results.hrdScore.components.extension",
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"base": {
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"path": "Element.extension"
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}, {
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}, {
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} ],
"path": "dnpm-lm-ngs-report.results.hrdScore.components.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
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"type": [ {
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"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.hrdScore.components.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.hrdScore.components.lst",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.hrdScore.components.lst"
},
"path": "dnpm-lm-ngs-report.results.hrdScore.components.lst",
"type": [ {
"code": "decimal"
} ],
"short": "Large-scale state transitions (LST)",
"definition": "Large-scale state transitions (LST)"
}, {
"id": "dnpm-lm-ngs-report.results.hrdScore.components.loh",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.hrdScore.components.loh"
},
"path": "dnpm-lm-ngs-report.results.hrdScore.components.loh",
"type": [ {
"code": "decimal"
} ],
"short": "Loss of heterozygosity (LOH)",
"definition": "Loss of heterozygosity (LOH)"
}, {
"id": "dnpm-lm-ngs-report.results.hrdScore.components.tai",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.hrdScore.components.tai"
},
"path": "dnpm-lm-ngs-report.results.hrdScore.components.tai",
"type": [ {
"code": "decimal"
} ],
"short": "Telomeric allelic imbalance (TAI)",
"definition": "Telomeric allelic imbalance (TAI)"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation",
"min": 0,
"definition": "HRD interpretation",
"short": "HRD interpretation",
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"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation.code",
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"code": "string"
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"short": "Interpretation code (e.g. low)",
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"path": "dnpm-lm-ngs-report.results.simpleVariants"
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}, {
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"path": "dnpm-lm-ngs-report.results.simpleVariants.patient",
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}, {
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"type": [ {
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} ],
"short": "Identifier value",
"definition": "Identifier value"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.system"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.system",
"type": [ {
"code": "string"
} ],
"short": "Identifier system URI",
"definition": "Identifier system URI"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.chromosome",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.chromosome"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.chromosome",
"type": [ {
"code": "string"
} ],
"short": "Chromosome (e.g. chr4)",
"definition": "Chromosome (e.g. chr4)"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene",
"min": 1,
"definition": "Affected gene",
"short": "Affected gene",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene"
}
}, {
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene.id",
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"min": 0,
"path": "Element.id"
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"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
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} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.extension",
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"isModifier": false,
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},
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"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
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"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene.code",
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"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.code"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.code",
"type": [ {
"code": "string"
} ],
"short": "HGNC gene code",
"definition": "HGNC gene code"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.display"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.display",
"type": [ {
"code": "string"
} ],
"short": "Gene symbol",
"definition": "Gene symbol"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.system"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.system",
"type": [ {
"code": "string"
} ],
"short": "Gene nomenclature system URI",
"definition": "Gene nomenclature system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization",
"min": 0,
"definition": "Variant localisation in gene",
"short": "Variant localisation in gene",
"type": [ {
"code": "BackboneElement"
} ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization",
"base": {
"max": "*",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization"
}
}, {
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"xpath": "@value|f:*|h:div",
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"severity": "error",
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}, {
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
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} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.extension",
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"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
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"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
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} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.code"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.code",
"type": [ {
"code": "string"
} ],
"short": "Localisation code",
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}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.display"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.display",
"type": [ {
"code": "string"
} ],
"short": "Localisation display",
"definition": "Localisation display"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.system"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.system",
"type": [ {
"code": "string"
} ],
"short": "Localisation system URI",
"definition": "Localisation system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId",
"min": 0,
"definition": "Transcript identifier",
"short": "Transcript identifier",
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"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId"
}
}, {
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.id",
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"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
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"type": [ {
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} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.id",
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"path": "Element.id"
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}, {
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}, {
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} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.extension",
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"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.extension",
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"base": {
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"path": "Element.extension"
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}, {
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"severity": "error",
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}, {
"key": "ext-1",
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"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
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"type": [ {
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"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
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"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.value"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.value",
"type": [ {
"code": "string"
} ],
"short": "Transcript ID value (e.g. ENST...)",
"definition": "Transcript ID value (e.g. ENST...)"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.system"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.system",
"type": [ {
"code": "string"
} ],
"short": "Transcript system URI",
"definition": "Transcript system URI"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.exonId",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.exonId"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.exonId",
"type": [ {
"code": "string"
} ],
"short": "Exon identifier",
"definition": "Exon identifier"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.position",
"min": 0,
"definition": "Genomic position (1-based)",
"short": "Genomic position (1-based)",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.simpleVariants.position",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.position"
}
}, {
"path": "dnpm-lm-ngs-report.results.simpleVariants.position.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.simpleVariants.position.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.position.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.simpleVariants.position.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.position.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.simpleVariants.position.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.position.start",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.position.start"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.position.start",
"type": [ {
"code": "integer"
} ],
"short": "Start position",
"definition": "Start position"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.position.end",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.position.end"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.position.end",
"type": [ {
"code": "integer"
} ],
"short": "End position",
"definition": "End position"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.altAllele",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.altAllele"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.altAllele",
"type": [ {
"code": "string"
} ],
"short": "Alternate allele",
"definition": "Alternate allele"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.refAllele",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.refAllele"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.refAllele",
"type": [ {
"code": "string"
} ],
"short": "Reference allele",
"definition": "Reference allele"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.dnaChange",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.dnaChange"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.dnaChange",
"type": [ {
"code": "string"
} ],
"short": "cDNA / DNA change in HGVS notation (e.g. c.570G>T)",
"definition": "cDNA / DNA change in HGVS notation (e.g. c.570G>T)"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.proteinChange",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.proteinChange"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.proteinChange",
"type": [ {
"code": "string"
} ],
"short": "Protein change in HGVS notation (e.g. p.(Glu125Asp))",
"definition": "Protein change in HGVS notation (e.g. p.(Glu125Asp))"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.readDepth",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.readDepth"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.readDepth",
"type": [ {
"code": "integer"
} ],
"short": "Read depth at variant position",
"definition": "Read depth at variant position"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.allelicFrequency",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.allelicFrequency"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.allelicFrequency",
"type": [ {
"code": "decimal"
} ],
"short": "Variant allelic frequency",
"definition": "Variant allelic frequency"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation",
"min": 0,
"definition": "ClinVar / clinical interpretation",
"short": "ClinVar / clinical interpretation",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.simpleVariants.interpretation",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation"
}
}, {
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
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} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.extension",
"min": 0,
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"isModifier": false,
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"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
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"discriminator": [ {
"path": "url",
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} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.code"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.code",
"type": [ {
"code": "string"
} ],
"short": "Interpretation code",
"definition": "Interpretation code"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.display"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.display",
"type": [ {
"code": "string"
} ],
"short": "Interpretation display",
"definition": "Interpretation display"
}, {
"id": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.system"
},
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.system",
"type": [ {
"code": "string"
} ],
"short": "Interpretation system URI",
"definition": "Interpretation system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants",
"min": 0,
"definition": "Copy number variants (CNV)",
"short": "Copy number variants (CNV)",
"type": [ {
"code": "BackboneElement"
} ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants",
"base": {
"max": "*",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants"
}
}, {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.id",
"min": 1,
"definition": "CNV ID",
"isModifier": false,
"short": "CNV ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
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"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
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"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient",
"min": 1,
"definition": "Patient reference",
"short": "Patient reference",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.patient",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient"
}
}, {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.id",
"min": 1,
"definition": "Patient ID",
"isModifier": false,
"short": "Patient ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
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} ],
"slicing": {
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},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.type",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.type"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.chromosome",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.chromosome"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.chromosome",
"type": [ {
"code": "string"
} ],
"short": "Chromosome (e.g. chr7)",
"definition": "Chromosome (e.g. chr7)"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization",
"min": 0,
"definition": "CNV localisation",
"short": "CNV localisation",
"type": [ {
"code": "BackboneElement"
} ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization",
"base": {
"max": "*",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization"
}
}, {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.code"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.code",
"type": [ {
"code": "string"
} ],
"short": "Localisation code",
"definition": "Localisation code"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.display"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.display",
"type": [ {
"code": "string"
} ],
"short": "Localisation display",
"definition": "Localisation display"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.system"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.system",
"type": [ {
"code": "string"
} ],
"short": "Localisation system URI",
"definition": "Localisation system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange",
"min": 0,
"definition": "Start position range",
"short": "Start position range",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange"
}
}, {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.start",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.start"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.start",
"type": [ {
"code": "integer"
} ],
"short": "Range start",
"definition": "Range start"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.end",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.end"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.end",
"type": [ {
"code": "integer"
} ],
"short": "Range end",
"definition": "Range end"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange",
"min": 0,
"definition": "End position range",
"short": "End position range",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange"
}
}, {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.start",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.start"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.start",
"type": [ {
"code": "integer"
} ],
"short": "Range start",
"definition": "Range start"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.end",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.end"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.end",
"type": [ {
"code": "integer"
} ],
"short": "Range end",
"definition": "Range end"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.totalCopyNumber",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.totalCopyNumber"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.totalCopyNumber",
"type": [ {
"code": "integer"
} ],
"short": "Total copy number",
"definition": "Total copy number"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.relativeCopyNumber",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.relativeCopyNumber"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.relativeCopyNumber",
"type": [ {
"code": "decimal"
} ],
"short": "Relative copy number",
"definition": "Relative copy number"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.cnA",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.cnA"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.cnA",
"type": [ {
"code": "integer"
} ],
"short": "Copy number allele A",
"definition": "Copy number allele A"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.cnB",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.cnB"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.cnB",
"type": [ {
"code": "integer"
} ],
"short": "Copy number allele B",
"definition": "Copy number allele B"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes",
"min": 0,
"definition": "Reported affected genes",
"short": "Reported affected genes",
"type": [ {
"code": "BackboneElement"
} ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes",
"base": {
"max": "*",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes"
}
}, {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
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"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.code"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.code",
"type": [ {
"code": "string"
} ],
"short": "HGNC gene code",
"definition": "HGNC gene code"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.display"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.display",
"type": [ {
"code": "string"
} ],
"short": "Gene symbol",
"definition": "Gene symbol"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.system"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.system",
"type": [ {
"code": "string"
} ],
"short": "Gene nomenclature system URI",
"definition": "Gene nomenclature system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality",
"min": 0,
"definition": "CNV focality",
"short": "CNV focality",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality"
}
}, {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
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"path": "url",
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} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.code"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.code",
"type": [ {
"code": "string"
} ],
"short": "Focality code (e.g. focal)",
"definition": "Focality code (e.g. focal)"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.display"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.display",
"type": [ {
"code": "string"
} ],
"short": "Focality display",
"definition": "Focality display"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.system"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.system",
"type": [ {
"code": "string"
} ],
"short": "Focality system URI",
"definition": "Focality system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type",
"min": 1,
"definition": "CNV type (gain / loss)",
"short": "CNV type (gain / loss)",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type"
}
}, {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.id",
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"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
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"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
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"severity": "error",
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}, {
"key": "ext-1",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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"severity": "error",
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} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.extension",
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},
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} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.code"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.code",
"type": [ {
"code": "string"
} ],
"short": "CNV type code",
"definition": "CNV type code"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.display"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.display",
"type": [ {
"code": "string"
} ],
"short": "CNV type display",
"definition": "CNV type display"
}, {
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.system"
},
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.system",
"type": [ {
"code": "string"
} ],
"short": "CNV type system URI",
"definition": "CNV type system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions",
"min": 0,
"definition": "DNA-level gene fusions",
"short": "DNA-level gene fusions",
"type": [ {
"code": "BackboneElement"
} ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.dnaFusions",
"base": {
"max": "*",
"min": 0,
"path": "dnpm-lm-ngs-report.results.dnaFusions"
}
}, {
"path": "dnpm-lm-ngs-report.results.dnaFusions.id",
"min": 1,
"definition": "DNA fusion ID",
"isModifier": false,
"short": "DNA fusion ID",
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"map": "n/a",
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} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.dnaFusions.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions.extension",
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"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
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"map": "n/a",
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"rules": "open",
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"path": "url",
"type": "value"
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},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.dnaFusions.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.dnaFusions.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient",
"min": 1,
"definition": "Patient reference",
"short": "Patient reference",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.dnaFusions.patient",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient"
}
}, {
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient.id",
"min": 1,
"definition": "Patient ID",
"isModifier": false,
"short": "Patient ID",
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"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.dnaFusions.patient.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
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"path": "url",
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},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.dnaFusions.patient.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.dnaFusions.patient.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.dnaFusions.patient.type",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient.type"
},
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization",
"min": 0,
"definition": "Fusion localisation",
"short": "Fusion localisation",
"type": [ {
"code": "BackboneElement"
} ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization",
"base": {
"max": "*",
"min": 0,
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization"
}
}, {
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
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"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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"severity": "error",
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} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.extension",
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"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
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},
"type": [ {
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} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
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}, {
"key": "ext-1",
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"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
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"mapping": [ {
"map": "N/A",
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} ],
"type": [ {
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} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.code"
},
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.code",
"type": [ {
"code": "string"
} ],
"short": "Localisation code",
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}, {
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.display"
},
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.display",
"type": [ {
"code": "string"
} ],
"short": "Localisation display",
"definition": "Localisation display"
}, {
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.system"
},
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.system",
"type": [ {
"code": "string"
} ],
"short": "Localisation system URI",
"definition": "Localisation system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime",
"min": 0,
"definition": "5-prime fusion partner",
"short": "5-prime fusion partner",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime"
}
}, {
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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}, {
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} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.extension",
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"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
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},
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"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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}, {
"key": "ext-1",
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"source": "http://hl7.org/fhir/StructureDefinition/Extension",
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"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
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} ],
"type": [ {
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} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene",
"min": 1,
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}, {
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"path": "dnpm-lm-ngs-report.results.rnaFusions.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.patient",
"min": 1,
"definition": "Patient reference",
"short": "Patient reference",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.rnaFusions.patient",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.patient"
}
}, {
"path": "dnpm-lm-ngs-report.results.rnaFusions.patient.id",
"min": 1,
"definition": "Patient ID",
"isModifier": false,
"short": "Patient ID",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "string"
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.rnaFusions.patient.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.patient.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.patient.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.patient.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.patient.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.patient.type",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.patient.type"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds",
"min": 0,
"definition": "External identifiers (e.g. COSMIC fusion ID)",
"short": "External identifiers (e.g. COSMIC fusion ID)",
"type": [ {
"code": "BackboneElement"
} ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.externalIds",
"base": {
"max": "*",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds"
}
}, {
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.value",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.value"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.value",
"type": [ {
"code": "string"
} ],
"short": "Identifier value",
"definition": "Identifier value"
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.system"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.system",
"type": [ {
"code": "string"
} ],
"short": "Identifier system URI",
"definition": "Identifier system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization",
"min": 0,
"definition": "Fusion localisation",
"short": "Fusion localisation",
"type": [ {
"code": "BackboneElement"
} ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization",
"base": {
"max": "*",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization"
}
}, {
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
"short": "Additional content defined by implementations",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"slicing": {
"rules": "open",
"description": "Extensions are always sliced by (at least) url",
"discriminator": [ {
"path": "url",
"type": "value"
} ]
},
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization.extension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.code"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.code",
"type": [ {
"code": "string"
} ],
"short": "Localisation code",
"definition": "Localisation code"
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.display"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.display",
"type": [ {
"code": "string"
} ],
"short": "Localisation display",
"definition": "Localisation display"
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.system"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.system",
"type": [ {
"code": "string"
} ],
"short": "Localisation system URI",
"definition": "Localisation system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime",
"min": 0,
"definition": "5-prime fusion partner",
"short": "5-prime fusion partner",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime"
}
}, {
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"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.extension",
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"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.modifierExtension",
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"base": {
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}, {
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"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene",
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"max": "1",
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}
}, {
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"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.extension",
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}, {
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} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.modifierExtension",
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"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.modifierExtension",
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"base": {
"max": "*",
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"path": "BackboneElement.modifierExtension"
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}, {
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"max": "1",
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},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.code",
"type": [ {
"code": "string"
} ],
"short": "HGNC gene code",
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"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.display",
"max": "1",
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"base": {
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"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.display"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.display",
"type": [ {
"code": "string"
} ],
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"min": 1,
"base": {
"max": "1",
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"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.system"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.system",
"type": [ {
"code": "string"
} ],
"short": "Gene nomenclature system URI",
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"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript",
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"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.modifierExtension",
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"base": {
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"path": "BackboneElement.modifierExtension"
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}, {
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},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.value",
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} ],
"short": "Transcript ID (e.g. ENST...)",
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}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.system",
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"base": {
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"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.system"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.system",
"type": [ {
"code": "string"
} ],
"short": "Transcript system URI",
"definition": "Transcript system URI"
}, {
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"min": 0,
"base": {
"max": "1",
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"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.exon"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.exon",
"type": [ {
"code": "string"
} ],
"short": "Exon identifier",
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}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.position",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.position"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.position",
"type": [ {
"code": "integer"
} ],
"short": "Breakpoint position",
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}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.strand",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.strand"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.strand",
"type": [ {
"code": "string"
} ],
"short": "Strand (+ or -)",
"definition": "Strand (+ or -)"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime",
"min": 0,
"definition": "3-prime fusion partner",
"short": "3-prime fusion partner",
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"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime"
}
}, {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.id",
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"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
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"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
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"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.id",
"base": {
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"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
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}, {
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} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.extension",
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"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
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"mapping": [ {
"map": "n/a",
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},
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"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
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}, {
"key": "ext-1",
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} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
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"type": [ {
"code": "Extension"
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"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene",
"min": 1,
"definition": "3-prime partner gene",
"short": "3-prime partner gene",
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"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene",
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene"
}
}, {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
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} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
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} ],
"representation": [ "xmlAttr" ],
"max": "1",
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}, {
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}, {
"key": "ext-1",
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"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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"severity": "error",
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} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.extension",
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"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"isModifier": false,
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"map": "n/a",
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},
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"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.extension",
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"base": {
"max": "*",
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"path": "Element.extension"
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"isSummary": false
}, {
"constraint": [ {
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"xpath": "@value|f:*|h:div",
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"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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"severity": "error",
"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
"identity": "rim"
} ],
"type": [ {
"code": "Extension"
} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.code"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.code",
"type": [ {
"code": "string"
} ],
"short": "HGNC gene code",
"definition": "HGNC gene code"
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.display"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.display",
"type": [ {
"code": "string"
} ],
"short": "Gene symbol",
"definition": "Gene symbol"
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.system"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.system",
"type": [ {
"code": "string"
} ],
"short": "Gene nomenclature system URI",
"definition": "Gene nomenclature system URI"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript",
"min": 0,
"definition": "3-prime transcript",
"short": "3-prime transcript",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript"
}
}, {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
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"map": "n/a",
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} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
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"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.id",
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"max": "1",
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"path": "Element.id"
},
"isSummary": false
}, {
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}, {
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} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.extension",
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"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
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"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.extension",
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"base": {
"max": "*",
"min": 0,
"path": "Element.extension"
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"isSummary": false
}, {
"constraint": [ {
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"expression": "extension.exists() != value.exists()"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.modifierExtension",
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"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
"mapping": [ {
"map": "N/A",
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"type": [ {
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} ],
"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.modifierExtension",
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"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.value",
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"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.value"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.value",
"type": [ {
"code": "string"
} ],
"short": "Transcript ID (e.g. ENST...)",
"definition": "Transcript ID (e.g. ENST...)"
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.system"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.system",
"type": [ {
"code": "string"
} ],
"short": "Transcript system URI",
"definition": "Transcript system URI"
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.exon",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.exon"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.exon",
"type": [ {
"code": "string"
} ],
"short": "Exon identifier",
"definition": "Exon identifier"
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.position",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.position"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.position",
"type": [ {
"code": "integer"
} ],
"short": "Breakpoint position",
"definition": "Breakpoint position"
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.strand",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.strand"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.strand",
"type": [ {
"code": "string"
} ],
"short": "Strand (+ or -)",
"definition": "Strand (+ or -)"
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element",
"severity": "error",
"expression": "hasValue() or (children().count() > id.count())"
} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect",
"min": 0,
"definition": "RNA fusion effect",
"short": "RNA fusion effect",
"type": [ {
"code": "BackboneElement"
} ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect",
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect"
}
}, {
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.id",
"min": 0,
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"isModifier": false,
"short": "Unique id for inter-element referencing",
"mapping": [ {
"map": "n/a",
"identity": "rim"
} ],
"type": [ {
"code": "http://hl7.org/fhirpath/System.String",
"extension": [ {
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
} ]
} ],
"representation": [ "xmlAttr" ],
"max": "1",
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.id",
"base": {
"max": "1",
"min": 0,
"path": "Element.id"
},
"isSummary": false
}, {
"constraint": [ {
"key": "ele-1",
"human": "All FHIR elements must have a @value or children",
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"severity": "error",
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}, {
"key": "ext-1",
"human": "Must have either extensions or value[x], not both",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension",
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} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.extension",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
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},
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"alias": [ "extensions", "user content" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.extension",
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"base": {
"max": "*",
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"path": "Element.extension"
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}, {
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}, {
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} ],
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.modifierExtension",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"min": 0,
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"isModifier": true,
"short": "Extensions that cannot be ignored even if unrecognized",
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} ],
"type": [ {
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"alias": [ "extensions", "user content", "modifiers" ],
"max": "*",
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.modifierExtension",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"base": {
"max": "*",
"min": 0,
"path": "BackboneElement.modifierExtension"
},
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.code",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.code"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.code",
"type": [ {
"code": "string"
} ],
"short": "Effect code (e.g. in-frame)",
"definition": "Effect code (e.g. in-frame)"
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.display",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.display"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.display",
"type": [ {
"code": "string"
} ],
"short": "Effect display",
"definition": "Effect display"
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.system",
"max": "1",
"min": 1,
"base": {
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.system"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.system",
"type": [ {
"code": "string"
} ],
"short": "Effect system URI",
"definition": "Effect system URI"
}, {
"id": "dnpm-lm-ngs-report.results.rnaFusions.reportedNumReads",
"max": "1",
"min": 0,
"base": {
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.rnaFusions.reportedNumReads"
},
"path": "dnpm-lm-ngs-report.results.rnaFusions.reportedNumReads",
"type": [ {
"code": "integer"
} ],
"short": "Number of reads supporting fusion",
"definition": "Number of reads supporting fusion"
} ],
"extension": [ {
"url": "http://hl7.org/fhir/tools/StructureDefinition/snapshot-base-version",
"valueString": "4.0.1"
} ]
},
"status": "active",
"id": "652c95f2-e263-4412-8bf9-c75adb111d13",
"kind": "logical",
"url": "https://dnpm-dip.net/fhir/StructureDefinition/dnpm-lm-ngs-report",
"version": "2027.0.0-ballot.1",
"differential": {
"element": [ {
"id": "dnpm-lm-ngs-report",
"path": "dnpm-lm-ngs-report",
"short": "DNPM NGS Report",
"definition": "Logical Model for a single entry in the DNPM DIP MTB Patient Record ngsReports array"
}, {
"id": "dnpm-lm-ngs-report.dnpmId",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.dnpmId",
"type": [ {
"code": "string"
} ],
"short": "NGS Report UUID (DNPM internal ID)",
"definition": "NGS Report UUID (DNPM internal ID)"
}, {
"id": "dnpm-lm-ngs-report.patient",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.patient",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Patient reference",
"definition": "Patient reference"
}, {
"id": "dnpm-lm-ngs-report.patient.id",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.patient.id",
"type": [ {
"code": "string"
} ],
"short": "Patient ID",
"definition": "Patient ID"
}, {
"id": "dnpm-lm-ngs-report.patient.type",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type (Patient)",
"definition": "Reference type (Patient)"
}, {
"id": "dnpm-lm-ngs-report.specimen",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.specimen",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Tumor specimen reference",
"definition": "Tumor specimen reference"
}, {
"id": "dnpm-lm-ngs-report.specimen.id",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.specimen.id",
"type": [ {
"code": "string"
} ],
"short": "Specimen ID",
"definition": "Specimen ID"
}, {
"id": "dnpm-lm-ngs-report.specimen.type",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.specimen.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type (TumorSpecimen)",
"definition": "Reference type (TumorSpecimen)"
}, {
"id": "dnpm-lm-ngs-report.issuedOn",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.issuedOn",
"type": [ {
"code": "string"
} ],
"short": "Report issue date (YYYY-MM-DD)",
"definition": "Report issue date (YYYY-MM-DD)"
}, {
"id": "dnpm-lm-ngs-report.type",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.type",
"type": [ {
"code": "BackboneElement"
} ],
"short": "NGS analysis type (e.g. exome, panel)",
"definition": "NGS analysis type (e.g. exome, panel)"
}, {
"id": "dnpm-lm-ngs-report.type.code",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.type.code",
"type": [ {
"code": "string"
} ],
"short": "Type code",
"definition": "Type code"
}, {
"id": "dnpm-lm-ngs-report.type.display",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.type.display",
"type": [ {
"code": "string"
} ],
"short": "Type display",
"definition": "Type display"
}, {
"id": "dnpm-lm-ngs-report.type.system",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.type.system",
"type": [ {
"code": "string"
} ],
"short": "Type system URI",
"definition": "Type system URI"
}, {
"id": "dnpm-lm-ngs-report.metadata",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata",
"type": [ {
"code": "BackboneElement"
} ],
"short": "NGS run metadata",
"definition": "NGS run metadata"
}, {
"id": "dnpm-lm-ngs-report.metadata.referenceGenome",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.referenceGenome",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Reference genome used",
"definition": "Reference genome used"
}, {
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.code",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.code",
"type": [ {
"code": "string"
} ],
"short": "Genome build code (e.g. GRCh38)",
"definition": "Genome build code (e.g. GRCh38)"
}, {
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.display",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.display",
"type": [ {
"code": "string"
} ],
"short": "Genome build display",
"definition": "Genome build display"
}, {
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.system",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.system",
"type": [ {
"code": "string"
} ],
"short": "Genome build system URI",
"definition": "Genome build system URI"
}, {
"id": "dnpm-lm-ngs-report.metadata.sequencer",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.sequencer",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Sequencer instrument",
"definition": "Sequencer instrument"
}, {
"id": "dnpm-lm-ngs-report.metadata.sequencer.code",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.sequencer.code",
"type": [ {
"code": "string"
} ],
"short": "Sequencer code",
"definition": "Sequencer code"
}, {
"id": "dnpm-lm-ngs-report.metadata.sequencer.display",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.sequencer.display",
"type": [ {
"code": "string"
} ],
"short": "Sequencer display",
"definition": "Sequencer display"
}, {
"id": "dnpm-lm-ngs-report.metadata.sequencer.system",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.sequencer.system",
"type": [ {
"code": "string"
} ],
"short": "Sequencer system URI",
"definition": "Sequencer system URI"
}, {
"id": "dnpm-lm-ngs-report.metadata.kitManufacturer",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.kitManufacturer",
"type": [ {
"code": "string"
} ],
"short": "Kit manufacturer name",
"definition": "Kit manufacturer name"
}, {
"id": "dnpm-lm-ngs-report.metadata.kitType",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.kitType",
"type": [ {
"code": "string"
} ],
"short": "Kit type name",
"definition": "Kit type name"
}, {
"id": "dnpm-lm-ngs-report.metadata.pipeline",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.pipeline",
"type": [ {
"code": "string"
} ],
"short": "Bioinformatics pipeline identifier",
"definition": "Bioinformatics pipeline identifier"
}, {
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Tumor cell content metadata estimate",
"definition": "Tumor cell content metadata estimate"
}, {
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Estimation method",
"definition": "Estimation method"
}, {
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.code",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.code",
"type": [ {
"code": "string"
} ],
"short": "Method code",
"definition": "Method code"
}, {
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.display",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.display",
"type": [ {
"code": "string"
} ],
"short": "Method display",
"definition": "Method display"
}, {
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.system",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.system",
"type": [ {
"code": "string"
} ],
"short": "Method system URI",
"definition": "Method system URI"
}, {
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.value",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.value",
"type": [ {
"code": "decimal"
} ],
"short": "Tumor cell content fraction (0.0 – 1.0)",
"definition": "Tumor cell content fraction (0.0 – 1.0)"
}, {
"id": "dnpm-lm-ngs-report.results",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results",
"type": [ {
"code": "BackboneElement"
} ],
"short": "NGS analysis results",
"definition": "NGS analysis results"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.tumorCellContent",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Bioinformatically determined tumor cell content",
"definition": "Bioinformatically determined tumor cell content"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.id",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.id",
"type": [ {
"code": "string"
} ],
"short": "Result ID",
"definition": "Result ID"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Patient reference",
"definition": "Patient reference"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient.id",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.id",
"type": [ {
"code": "string"
} ],
"short": "Patient ID",
"definition": "Patient ID"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient.type",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Specimen reference",
"definition": "Specimen reference"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.id",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.id",
"type": [ {
"code": "string"
} ],
"short": "Specimen ID",
"definition": "Specimen ID"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.type",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Determination method",
"definition": "Determination method"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.code",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.code",
"type": [ {
"code": "string"
} ],
"short": "Method code",
"definition": "Method code"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.display",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.display",
"type": [ {
"code": "string"
} ],
"short": "Method display",
"definition": "Method display"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.system",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.system",
"type": [ {
"code": "string"
} ],
"short": "Method system URI",
"definition": "Method system URI"
}, {
"id": "dnpm-lm-ngs-report.results.tumorCellContent.value",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tumorCellContent.value",
"type": [ {
"code": "decimal"
} ],
"short": "Tumor cell content fraction (0.0 – 1.0)",
"definition": "Tumor cell content fraction (0.0 – 1.0)"
}, {
"id": "dnpm-lm-ngs-report.results.tmb",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.tmb",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Tumor Mutational Burden",
"definition": "Tumor Mutational Burden"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.id",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.id",
"type": [ {
"code": "string"
} ],
"short": "TMB result ID",
"definition": "TMB result ID"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.patient",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.patient",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Patient reference",
"definition": "Patient reference"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.patient.id",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.patient.id",
"type": [ {
"code": "string"
} ],
"short": "Patient ID",
"definition": "Patient ID"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.patient.type",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.specimen",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.specimen",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Specimen reference",
"definition": "Specimen reference"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.specimen.id",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.specimen.id",
"type": [ {
"code": "string"
} ],
"short": "Specimen ID",
"definition": "Specimen ID"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.specimen.type",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.specimen.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.value",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.value",
"type": [ {
"code": "BackboneElement"
} ],
"short": "TMB quantity",
"definition": "TMB quantity"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.value.value",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.value.value",
"type": [ {
"code": "decimal"
} ],
"short": "Numeric TMB value",
"definition": "Numeric TMB value"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.value.unit",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.value.unit",
"type": [ {
"code": "string"
} ],
"short": "Unit (e.g. Mutations per megabase)",
"definition": "Unit (e.g. Mutations per megabase)"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.interpretation",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.tmb.interpretation",
"type": [ {
"code": "BackboneElement"
} ],
"short": "TMB interpretation",
"definition": "TMB interpretation"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.code",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.code",
"type": [ {
"code": "string"
} ],
"short": "Interpretation code (e.g. high)",
"definition": "Interpretation code (e.g. high)"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.display",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.display",
"type": [ {
"code": "string"
} ],
"short": "Interpretation display",
"definition": "Interpretation display"
}, {
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.system",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.system",
"type": [ {
"code": "string"
} ],
"short": "Interpretation system URI",
"definition": "Interpretation system URI"
}, {
"id": "dnpm-lm-ngs-report.results.brcaness",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.brcaness",
"type": [ {
"code": "BackboneElement"
} ],
"short": "BRCAness score",
"definition": "BRCAness score"
}, {
"id": "dnpm-lm-ngs-report.results.brcaness.id",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.id",
"type": [ {
"code": "string"
} ],
"short": "BRCAness result ID",
"definition": "BRCAness result ID"
}, {
"id": "dnpm-lm-ngs-report.results.brcaness.patient",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.patient",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Patient reference",
"definition": "Patient reference"
}, {
"id": "dnpm-lm-ngs-report.results.brcaness.patient.id",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.patient.id",
"type": [ {
"code": "string"
} ],
"short": "Patient ID",
"definition": "Patient ID"
}, {
"id": "dnpm-lm-ngs-report.results.brcaness.patient.type",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"id": "dnpm-lm-ngs-report.results.brcaness.specimen",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.specimen",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Specimen reference",
"definition": "Specimen reference"
}, {
"id": "dnpm-lm-ngs-report.results.brcaness.specimen.id",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.specimen.id",
"type": [ {
"code": "string"
} ],
"short": "Specimen ID",
"definition": "Specimen ID"
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"path": "dnpm-lm-ngs-report.results.brcaness.specimen.type",
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"definition": "Reference type"
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"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.value",
"type": [ {
"code": "decimal"
} ],
"short": "BRCAness score (0.0 – 1.0)",
"definition": "BRCAness score (0.0 – 1.0)"
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"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange",
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"code": "BackboneElement"
} ],
"short": "Confidence range",
"definition": "Confidence range"
}, {
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"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.min",
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"code": "decimal"
} ],
"short": "Minimum confidence value",
"definition": "Minimum confidence value"
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"min": 1,
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.max",
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"code": "decimal"
} ],
"short": "Maximum confidence value",
"definition": "Maximum confidence value"
}, {
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"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.hrdScore",
"type": [ {
"code": "BackboneElement"
} ],
"short": "Homologous Recombination Deficiency Score",
"definition": "Homologous Recombination Deficiency Score"
}, {
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"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.id",
"type": [ {
"code": "string"
} ],
"short": "HRD result ID",
"definition": "HRD result ID"
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"id": "dnpm-lm-ngs-report.results.hrdScore.patient",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.patient",
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"code": "BackboneElement"
} ],
"short": "Patient reference",
"definition": "Patient reference"
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"path": "dnpm-lm-ngs-report.results.hrdScore.patient.id",
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"code": "string"
} ],
"short": "Patient ID",
"definition": "Patient ID"
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"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.patient.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
}, {
"id": "dnpm-lm-ngs-report.results.hrdScore.specimen",
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"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.specimen",
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"code": "BackboneElement"
} ],
"short": "Specimen reference",
"definition": "Specimen reference"
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"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.specimen.id",
"type": [ {
"code": "string"
} ],
"short": "Specimen ID",
"definition": "Specimen ID"
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"id": "dnpm-lm-ngs-report.results.hrdScore.specimen.type",
"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.specimen.type",
"type": [ {
"code": "string"
} ],
"short": "Reference type",
"definition": "Reference type"
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"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.value",
"type": [ {
"code": "decimal"
} ],
"short": "HRD composite score",
"definition": "HRD composite score"
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"id": "dnpm-lm-ngs-report.results.hrdScore.components",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.hrdScore.components",
"type": [ {
"code": "BackboneElement"
} ],
"short": "HRD component scores",
"definition": "HRD component scores"
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"id": "dnpm-lm-ngs-report.results.hrdScore.components.lst",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.hrdScore.components.lst",
"type": [ {
"code": "decimal"
} ],
"short": "Large-scale state transitions (LST)",
"definition": "Large-scale state transitions (LST)"
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"id": "dnpm-lm-ngs-report.results.hrdScore.components.loh",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.hrdScore.components.loh",
"type": [ {
"code": "decimal"
} ],
"short": "Loss of heterozygosity (LOH)",
"definition": "Loss of heterozygosity (LOH)"
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"id": "dnpm-lm-ngs-report.results.hrdScore.components.tai",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.hrdScore.components.tai",
"type": [ {
"code": "decimal"
} ],
"short": "Telomeric allelic imbalance (TAI)",
"definition": "Telomeric allelic imbalance (TAI)"
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"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation",
"type": [ {
"code": "BackboneElement"
} ],
"short": "HRD interpretation",
"definition": "HRD interpretation"
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"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation.code",
"type": [ {
"code": "string"
} ],
"short": "Interpretation code (e.g. low)",
"definition": "Interpretation code (e.g. low)"
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"id": "dnpm-lm-ngs-report.results.hrdScore.interpretation.display",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation.display",
"type": [ {
"code": "string"
} ],
"short": "Interpretation display",
"definition": "Interpretation display"
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"min": 1,
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation.system",
"type": [ {
"code": "string"
} ],
"short": "Interpretation system URI",
"definition": "Interpretation system URI"
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"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants",
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"code": "BackboneElement"
} ],
"short": "Simple variants (SNV / small indels)",
"definition": "Simple variants (SNV / small indels)"
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"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.id",
"type": [ {
"code": "string"
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"short": "Variant ID",
"definition": "Variant ID"
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"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.patient",
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"code": "BackboneElement"
} ],
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"definition": "Patient reference"
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"path": "dnpm-lm-ngs-report.results.simpleVariants.patient.id",
"type": [ {
"code": "string"
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"short": "Patient ID",
"definition": "Patient ID"
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"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.patient.type",
"type": [ {
"code": "string"
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"short": "Reference type",
"definition": "Reference type"
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"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds",
"type": [ {
"code": "BackboneElement"
} ],
"short": "External variant identifiers (e.g. dbSNP rs-number)",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.value",
"type": [ {
"code": "string"
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"short": "Identifier value",
"definition": "Identifier value"
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"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.system",
"type": [ {
"code": "string"
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"short": "Identifier system URI",
"definition": "Identifier system URI"
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"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.chromosome",
"type": [ {
"code": "string"
} ],
"short": "Chromosome (e.g. chr4)",
"definition": "Chromosome (e.g. chr4)"
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"path": "dnpm-lm-ngs-report.results.simpleVariants.gene",
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"code": "BackboneElement"
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"short": "Affected gene",
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"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.code",
"type": [ {
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"short": "HGNC gene code",
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"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.display",
"type": [ {
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"short": "Gene symbol",
"definition": "Gene symbol"
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"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.system",
"type": [ {
"code": "string"
} ],
"short": "Gene nomenclature system URI",
"definition": "Gene nomenclature system URI"
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"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization",
"type": [ {
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"short": "Variant localisation in gene",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.code",
"type": [ {
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"short": "Localisation code",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.display",
"type": [ {
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"short": "Localisation display",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.system",
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"short": "Localisation system URI",
"definition": "Localisation system URI"
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"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId",
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"short": "Transcript identifier",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.value",
"type": [ {
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"short": "Transcript ID value (e.g. ENST...)",
"definition": "Transcript ID value (e.g. ENST...)"
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"short": "Transcript system URI",
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"max": "1",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.exonId",
"type": [ {
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"short": "Exon identifier",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.position",
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"short": "Genomic position (1-based)",
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"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.position.start",
"type": [ {
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"short": "Start position",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.position.end",
"type": [ {
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"short": "End position",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.altAllele",
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"short": "Alternate allele",
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"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.refAllele",
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"short": "Reference allele",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.dnaChange",
"type": [ {
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} ],
"short": "cDNA / DNA change in HGVS notation (e.g. c.570G>T)",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.proteinChange",
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} ],
"short": "Protein change in HGVS notation (e.g. p.(Glu125Asp))",
"definition": "Protein change in HGVS notation (e.g. p.(Glu125Asp))"
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"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.readDepth",
"type": [ {
"code": "integer"
} ],
"short": "Read depth at variant position",
"definition": "Read depth at variant position"
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"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.allelicFrequency",
"type": [ {
"code": "decimal"
} ],
"short": "Variant allelic frequency",
"definition": "Variant allelic frequency"
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"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation",
"type": [ {
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"short": "ClinVar / clinical interpretation",
"definition": "ClinVar / clinical interpretation"
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"max": "1",
"min": 1,
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.code",
"type": [ {
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} ],
"short": "Interpretation code",
"definition": "Interpretation code"
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"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.display",
"type": [ {
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"short": "Interpretation display",
"definition": "Interpretation display"
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"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.system",
"type": [ {
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} ],
"short": "Interpretation system URI",
"definition": "Interpretation system URI"
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"max": "*",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants",
"type": [ {
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"short": "Copy number variants (CNV)",
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"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.id",
"type": [ {
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"short": "CNV ID",
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient",
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"short": "Patient reference",
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.id",
"type": [ {
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"short": "Patient ID",
"definition": "Patient ID"
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"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.type",
"type": [ {
"code": "string"
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"short": "Reference type",
"definition": "Reference type"
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"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.chromosome",
"type": [ {
"code": "string"
} ],
"short": "Chromosome (e.g. chr7)",
"definition": "Chromosome (e.g. chr7)"
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"max": "*",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization",
"type": [ {
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"short": "CNV localisation",
"definition": "CNV localisation"
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.code",
"type": [ {
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"short": "Localisation code",
"definition": "Localisation code"
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.display",
"type": [ {
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"short": "Localisation display",
"definition": "Localisation display"
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.system",
"type": [ {
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} ],
"short": "Localisation system URI",
"definition": "Localisation system URI"
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"max": "1",
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange",
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"short": "Start position range",
"definition": "Start position range"
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.start",
"type": [ {
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"short": "Range start",
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.end",
"type": [ {
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"short": "Range end",
"definition": "Range end"
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"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange",
"max": "1",
"min": 0,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange",
"type": [ {
"code": "BackboneElement"
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"short": "End position range",
"definition": "End position range"
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"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.start",
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.start",
"type": [ {
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} ],
"short": "Range start",
"definition": "Range start"
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.system",
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"short": "Gene nomenclature system URI",
"definition": "Gene nomenclature system URI"
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.code",
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.system",
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type",
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"min": 1,
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.code",
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.display",
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"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.system",
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"short": "CNV type system URI",
"definition": "CNV type system URI"
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"path": "dnpm-lm-ngs-report.results.dnaFusions",
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"path": "dnpm-lm-ngs-report.results.dnaFusions.patient",
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"path": "dnpm-lm-ngs-report.results.dnaFusions.patient.id",
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"definition": "Patient ID"
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"path": "dnpm-lm-ngs-report.results.dnaFusions.patient.type",
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"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.code",
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"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.display",
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"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.system",
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"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.system",
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"definition": "Gene nomenclature system URI"
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"definition": "Gene nomenclature system URI"
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"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds",
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"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.value",
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"definition": "Gene nomenclature system URI"
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"short": "Transcript ID (e.g. ENST...)",
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"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.position",
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"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.strand",
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"path": "dnpm-lm-ngs-report.results.rnaFusions.effect",
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} ],
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"definition": "RNA fusion effect"
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"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.code",
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"short": "Number of reads supporting fusion",
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},
"contact": [ {
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"telecom": [ {
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"system": "url"
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} ],
"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Element"
}