description: This cross-version extension represents MolecularSequence.structureVariant from http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.0.1 for use in FHIR R5.
package_name: hl7.fhir.uv.xver-r4.r5
derivation: constraint
name: Ext_R4_MolecularSequence_structureVariant
type: Extension
elements:
  extension:
    base: {max: '*', min: 0, path: Extension.extension}
    array: true
    index: 0
    slicing:
      rules: closed
      ordered: false
      discriminator:
      - {path: url, type: value}
      min: 0
      slices:
        variantType:
          match: {url: variantType}
          schema:
            short: Structural variant change type
            base: {max: '*', min: 0, path: Extension.extension}
            index: 1
            elements:
              url:
                base: {max: '1', min: 1, path: Extension.url}
                pattern: {type: Uri, value: variantType}
                index: 2
              value:
                base: {max: '1', min: 0, path: 'Extension.value[x]'}
                short: Structural variant change type
                choices: [valueCodeableConcept]
                index: 4
              valueCodeableConcept:
                base: {max: '1', min: 0, path: 'Extension.value[x]'}
                type: CodeableConcept
                short: Structural variant change type
                choiceOf: value
                index: 5
            required: [url]
        exact:
          match: {url: exact}
          schema:
            short: Does the structural variant have base pair resolution breakpoints?
            base: {max: '*', min: 0, path: Extension.extension}
            index: 6
            elements:
              url:
                base: {max: '1', min: 1, path: Extension.url}
                pattern: {type: Uri, value: exact}
                index: 7
              value:
                base: {max: '1', min: 0, path: 'Extension.value[x]'}
                short: Does the structural variant have base pair resolution breakpoints?
                choices: [valueBoolean]
                index: 9
              valueBoolean:
                base: {max: '1', min: 0, path: 'Extension.value[x]'}
                type: boolean
                short: Does the structural variant have base pair resolution breakpoints?
                choiceOf: value
                index: 10
            required: [url]
        length:
          match: {url: length}
          schema:
            short: Structural variant length
            base: {max: '*', min: 0, path: Extension.extension}
            index: 11
            elements:
              url:
                base: {max: '1', min: 1, path: Extension.url}
                pattern: {type: Uri, value: length}
                index: 12
              value:
                base: {max: '1', min: 0, path: 'Extension.value[x]'}
                short: Structural variant length
                choices: [valueInteger]
                index: 14
              valueInteger:
                base: {max: '1', min: 0, path: 'Extension.value[x]'}
                type: integer
                short: Structural variant length
                choiceOf: value
                index: 15
            required: [url]
        outer:
          match: {url: outer}
          schema:
            base: {max: '*', min: 0, path: Extension.extension}
            short: Structural variant outer
            index: 16
            extensions:
              start:
                url: start
                short: Structural variant outer start
                base: {max: '*', min: 0, path: Extension.extension}
                index: 18
                elements:
                  url:
                    base: {max: '1', min: 1, path: Extension.url}
                    pattern: {type: Uri, value: start}
                    index: 19
                  value:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    short: Structural variant outer start
                    choices: [valueInteger]
                    index: 21
                  valueInteger:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    type: integer
                    short: Structural variant outer start
                    choiceOf: value
                    index: 22
                required: [url]
              end:
                url: end
                short: Structural variant outer end
                base: {max: '*', min: 0, path: Extension.extension}
                index: 23
                elements:
                  url:
                    base: {max: '1', min: 1, path: Extension.url}
                    pattern: {type: Uri, value: end}
                    index: 24
                  value:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    short: Structural variant outer end
                    choices: [valueInteger]
                    index: 26
                  valueInteger:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    type: integer
                    short: Structural variant outer end
                    choiceOf: value
                    index: 27
                required: [url]
            elements:
              extension:
                base: {max: '*', min: 0, path: Extension.extension}
                array: true
                index: 17
                slicing:
                  rules: closed
                  ordered: false
                  discriminator:
                  - {path: url, type: value}
                  min: 0
                  slices:
                    start:
                      match: {url: start}
                      schema:
                        short: Structural variant outer start
                        base: {max: '*', min: 0, path: Extension.extension}
                        index: 18
                        elements:
                          url:
                            base: {max: '1', min: 1, path: Extension.url}
                            pattern: {type: Uri, value: start}
                            index: 19
                          value:
                            base: {max: '1', min: 0, path: 'Extension.value[x]'}
                            short: Structural variant outer start
                            choices: [valueInteger]
                            index: 21
                          valueInteger:
                            base: {max: '1', min: 0, path: 'Extension.value[x]'}
                            type: integer
                            short: Structural variant outer start
                            choiceOf: value
                            index: 22
                        required: [url]
                    end:
                      match: {url: end}
                      schema:
                        short: Structural variant outer end
                        base: {max: '*', min: 0, path: Extension.extension}
                        index: 23
                        elements:
                          url:
                            base: {max: '1', min: 1, path: Extension.url}
                            pattern: {type: Uri, value: end}
                            index: 24
                          value:
                            base: {max: '1', min: 0, path: 'Extension.value[x]'}
                            short: Structural variant outer end
                            choices: [valueInteger]
                            index: 26
                          valueInteger:
                            base: {max: '1', min: 0, path: 'Extension.value[x]'}
                            type: integer
                            short: Structural variant outer end
                            choiceOf: value
                            index: 27
                        required: [url]
              url:
                base: {max: '1', min: 1, path: Extension.url}
                pattern: {type: Uri, value: outer}
                index: 28
            required: [url]
        inner:
          match: {url: inner}
          schema:
            base: {max: '*', min: 0, path: Extension.extension}
            short: Structural variant inner
            index: 29
            extensions:
              start:
                url: start
                short: Structural variant inner start
                base: {max: '*', min: 0, path: Extension.extension}
                index: 31
                elements:
                  url:
                    base: {max: '1', min: 1, path: Extension.url}
                    pattern: {type: Uri, value: start}
                    index: 32
                  value:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    short: Structural variant inner start
                    choices: [valueInteger]
                    index: 34
                  valueInteger:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    type: integer
                    short: Structural variant inner start
                    choiceOf: value
                    index: 35
                required: [url]
              end:
                url: end
                short: Structural variant inner end
                base: {max: '*', min: 0, path: Extension.extension}
                index: 36
                elements:
                  url:
                    base: {max: '1', min: 1, path: Extension.url}
                    pattern: {type: Uri, value: end}
                    index: 37
                  value:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    short: Structural variant inner end
                    choices: [valueInteger]
                    index: 39
                  valueInteger:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    type: integer
                    short: Structural variant inner end
                    choiceOf: value
                    index: 40
                required: [url]
            elements:
              extension:
                base: {max: '*', min: 0, path: Extension.extension}
                array: true
                index: 30
                slicing:
                  rules: closed
                  ordered: false
                  discriminator:
                  - {path: url, type: value}
                  min: 0
                  slices:
                    start:
                      match: {url: start}
                      schema:
                        short: Structural variant inner start
                        base: {max: '*', min: 0, path: Extension.extension}
                        index: 31
                        elements:
                          url:
                            base: {max: '1', min: 1, path: Extension.url}
                            pattern: {type: Uri, value: start}
                            index: 32
                          value:
                            base: {max: '1', min: 0, path: 'Extension.value[x]'}
                            short: Structural variant inner start
                            choices: [valueInteger]
                            index: 34
                          valueInteger:
                            base: {max: '1', min: 0, path: 'Extension.value[x]'}
                            type: integer
                            short: Structural variant inner start
                            choiceOf: value
                            index: 35
                        required: [url]
                    end:
                      match: {url: end}
                      schema:
                        short: Structural variant inner end
                        base: {max: '*', min: 0, path: Extension.extension}
                        index: 36
                        elements:
                          url:
                            base: {max: '1', min: 1, path: Extension.url}
                            pattern: {type: Uri, value: end}
                            index: 37
                          value:
                            base: {max: '1', min: 0, path: 'Extension.value[x]'}
                            short: Structural variant inner end
                            choices: [valueInteger]
                            index: 39
                          valueInteger:
                            base: {max: '1', min: 0, path: 'Extension.value[x]'}
                            type: integer
                            short: Structural variant inner end
                            choiceOf: value
                            index: 40
                        required: [url]
              url:
                base: {max: '1', min: 1, path: Extension.url}
                pattern: {type: Uri, value: inner}
                index: 41
            required: [url]
  url:
    base: {max: '1', min: 1, path: Extension.url}
    pattern: {type: Uri, value: 'http://hl7.org/fhir/4.0/StructureDefinition/extension-MolecularSequence.structureVariant'}
    index: 42
package_version: 0.0.1-snapshot-2
extensions:
  variantType:
    url: variantType
    short: Structural variant change type
    base: {max: '*', min: 0, path: Extension.extension}
    index: 1
    elements:
      url:
        base: {max: '1', min: 1, path: Extension.url}
        pattern: {type: Uri, value: variantType}
        index: 2
      value:
        base: {max: '1', min: 0, path: 'Extension.value[x]'}
        short: Structural variant change type
        choices: [valueCodeableConcept]
        index: 4
      valueCodeableConcept:
        base: {max: '1', min: 0, path: 'Extension.value[x]'}
        type: CodeableConcept
        short: Structural variant change type
        choiceOf: value
        index: 5
    required: [url]
  exact:
    url: exact
    short: Does the structural variant have base pair resolution breakpoints?
    base: {max: '*', min: 0, path: Extension.extension}
    index: 6
    elements:
      url:
        base: {max: '1', min: 1, path: Extension.url}
        pattern: {type: Uri, value: exact}
        index: 7
      value:
        base: {max: '1', min: 0, path: 'Extension.value[x]'}
        short: Does the structural variant have base pair resolution breakpoints?
        choices: [valueBoolean]
        index: 9
      valueBoolean:
        base: {max: '1', min: 0, path: 'Extension.value[x]'}
        type: boolean
        short: Does the structural variant have base pair resolution breakpoints?
        choiceOf: value
        index: 10
    required: [url]
  length:
    url: length
    short: Structural variant length
    base: {max: '*', min: 0, path: Extension.extension}
    index: 11
    elements:
      url:
        base: {max: '1', min: 1, path: Extension.url}
        pattern: {type: Uri, value: length}
        index: 12
      value:
        base: {max: '1', min: 0, path: 'Extension.value[x]'}
        short: Structural variant length
        choices: [valueInteger]
        index: 14
      valueInteger:
        base: {max: '1', min: 0, path: 'Extension.value[x]'}
        type: integer
        short: Structural variant length
        choiceOf: value
        index: 15
    required: [url]
  outer:
    url: outer
    base: {max: '*', min: 0, path: Extension.extension}
    short: Structural variant outer
    index: 16
    extensions:
      start:
        url: start
        short: Structural variant outer start
        base: {max: '*', min: 0, path: Extension.extension}
        index: 18
        elements:
          url:
            base: {max: '1', min: 1, path: Extension.url}
            pattern: {type: Uri, value: start}
            index: 19
          value:
            base: {max: '1', min: 0, path: 'Extension.value[x]'}
            short: Structural variant outer start
            choices: [valueInteger]
            index: 21
          valueInteger:
            base: {max: '1', min: 0, path: 'Extension.value[x]'}
            type: integer
            short: Structural variant outer start
            choiceOf: value
            index: 22
        required: [url]
      end:
        url: end
        short: Structural variant outer end
        base: {max: '*', min: 0, path: Extension.extension}
        index: 23
        elements:
          url:
            base: {max: '1', min: 1, path: Extension.url}
            pattern: {type: Uri, value: end}
            index: 24
          value:
            base: {max: '1', min: 0, path: 'Extension.value[x]'}
            short: Structural variant outer end
            choices: [valueInteger]
            index: 26
          valueInteger:
            base: {max: '1', min: 0, path: 'Extension.value[x]'}
            type: integer
            short: Structural variant outer end
            choiceOf: value
            index: 27
        required: [url]
    elements:
      extension:
        base: {max: '*', min: 0, path: Extension.extension}
        array: true
        index: 17
        slicing:
          rules: closed
          ordered: false
          discriminator:
          - {path: url, type: value}
          min: 0
          slices:
            start:
              match: {url: start}
              schema:
                short: Structural variant outer start
                base: {max: '*', min: 0, path: Extension.extension}
                index: 18
                elements:
                  url:
                    base: {max: '1', min: 1, path: Extension.url}
                    pattern: {type: Uri, value: start}
                    index: 19
                  value:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    short: Structural variant outer start
                    choices: [valueInteger]
                    index: 21
                  valueInteger:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    type: integer
                    short: Structural variant outer start
                    choiceOf: value
                    index: 22
                required: [url]
            end:
              match: {url: end}
              schema:
                short: Structural variant outer end
                base: {max: '*', min: 0, path: Extension.extension}
                index: 23
                elements:
                  url:
                    base: {max: '1', min: 1, path: Extension.url}
                    pattern: {type: Uri, value: end}
                    index: 24
                  value:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    short: Structural variant outer end
                    choices: [valueInteger]
                    index: 26
                  valueInteger:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    type: integer
                    short: Structural variant outer end
                    choiceOf: value
                    index: 27
                required: [url]
      url:
        base: {max: '1', min: 1, path: Extension.url}
        pattern: {type: Uri, value: outer}
        index: 28
    required: [url]
  inner:
    url: inner
    base: {max: '*', min: 0, path: Extension.extension}
    short: Structural variant inner
    index: 29
    extensions:
      start:
        url: start
        short: Structural variant inner start
        base: {max: '*', min: 0, path: Extension.extension}
        index: 31
        elements:
          url:
            base: {max: '1', min: 1, path: Extension.url}
            pattern: {type: Uri, value: start}
            index: 32
          value:
            base: {max: '1', min: 0, path: 'Extension.value[x]'}
            short: Structural variant inner start
            choices: [valueInteger]
            index: 34
          valueInteger:
            base: {max: '1', min: 0, path: 'Extension.value[x]'}
            type: integer
            short: Structural variant inner start
            choiceOf: value
            index: 35
        required: [url]
      end:
        url: end
        short: Structural variant inner end
        base: {max: '*', min: 0, path: Extension.extension}
        index: 36
        elements:
          url:
            base: {max: '1', min: 1, path: Extension.url}
            pattern: {type: Uri, value: end}
            index: 37
          value:
            base: {max: '1', min: 0, path: 'Extension.value[x]'}
            short: Structural variant inner end
            choices: [valueInteger]
            index: 39
          valueInteger:
            base: {max: '1', min: 0, path: 'Extension.value[x]'}
            type: integer
            short: Structural variant inner end
            choiceOf: value
            index: 40
        required: [url]
    elements:
      extension:
        base: {max: '*', min: 0, path: Extension.extension}
        array: true
        index: 30
        slicing:
          rules: closed
          ordered: false
          discriminator:
          - {path: url, type: value}
          min: 0
          slices:
            start:
              match: {url: start}
              schema:
                short: Structural variant inner start
                base: {max: '*', min: 0, path: Extension.extension}
                index: 31
                elements:
                  url:
                    base: {max: '1', min: 1, path: Extension.url}
                    pattern: {type: Uri, value: start}
                    index: 32
                  value:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    short: Structural variant inner start
                    choices: [valueInteger]
                    index: 34
                  valueInteger:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    type: integer
                    short: Structural variant inner start
                    choiceOf: value
                    index: 35
                required: [url]
            end:
              match: {url: end}
              schema:
                short: Structural variant inner end
                base: {max: '*', min: 0, path: Extension.extension}
                index: 36
                elements:
                  url:
                    base: {max: '1', min: 1, path: Extension.url}
                    pattern: {type: Uri, value: end}
                    index: 37
                  value:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    short: Structural variant inner end
                    choices: [valueInteger]
                    index: 39
                  valueInteger:
                    base: {max: '1', min: 0, path: 'Extension.value[x]'}
                    type: integer
                    short: Structural variant inner end
                    choiceOf: value
                    index: 40
                required: [url]
      url:
        base: {max: '1', min: 1, path: Extension.url}
        pattern: {type: Uri, value: inner}
        index: 41
    required: [url]
class: extension
kind: complex-type
url: http://hl7.org/fhir/4.0/StructureDefinition/extension-MolecularSequence.structureVariant
base: http://hl7.org/fhir/StructureDefinition/Extension|5.0.0
version: 0.0.1-snapshot-2
required: [url]