{
  "description": "This mapping maps FHIR AllergyIntolerance instances to OMOP Observation Table objects.",
  "_filename": "StructureMap-AllergyMap.json",
  "package_name": "hl7.fhir.uv.omop",
  "date": "2025-07-29T21:03:04+00:00",
  "group": [ {
    "name": "Observation",
    "rule": [ {
      "name": "code",
      "rule": [ {
        "name": "coding",
        "rule": [ {
          "name": "code",
          "source": [ {
            "context": "sc",
            "element": "code"
          } ],
          "target": [ {
            "context": "tgt",
            "element": "observation_concept_id"
          }, {
            "context": "tgt",
            "element": "observation_source_value"
          }, {
            "context": "tgt",
            "element": "observation_source_concept_id"
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        } ],
        "source": [ {
          "context": "s",
          "element": "coding",
          "variable": "sc"
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        "target": [ {
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            "valueId": "tgt"
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          "transform": "copy"
        } ]
      } ],
      "source": [ {
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        "variable": "s"
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      "target": [ {
        "parameter": [ {
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        "transform": "copy"
      } ],
      "documentation": "src.id as id -> tgt.observation_id = cast(id, \"integer\");"
    }, {
      "name": "onsetDateTime",
      "source": [ {
        "type": "dateTime",
        "context": "src",
        "element": "onset",
        "variable": "osd"
      } ],
      "target": [ {
        "context": "tgt",
        "element": "observation_date",
        "parameter": [ {
          "valueId": "osd"
        }, {
          "valueString": "date"
        } ],
        "transform": "cast"
      }, {
        "context": "tgt",
        "element": "observation_datetime",
        "parameter": [ {
          "valueId": "osd"
        } ],
        "transform": "copy"
      } ],
      "documentation": "src.patient as s -> tgt then {"
    }, {
      "name": "reaction",
      "rule": [ {
        "name": "manifestation",
        "rule": [ {
          "name": "concept",
          "rule": [ {
            "name": "coding",
            "rule": [ {
              "name": "code",
              "source": [ {
                "context": "sc",
                "element": "code"
              } ],
              "target": [ {
                "context": "tgt",
                "element": "value_as_concept_id"
              }, {
                "context": "tgt",
                "element": "value_source_value"
              } ]
            } ],
            "source": [ {
              "context": "smanc",
              "element": "coding",
              "variable": "sc"
            } ],
            "target": [ {
              "parameter": [ {
                "valueId": "tgt"
              } ],
              "transform": "copy"
            } ]
          } ],
          "source": [ {
            "context": "sman",
            "element": "concept",
            "variable": "smanc"
          } ],
          "target": [ {
            "parameter": [ {
              "valueId": "tgt"
            } ],
            "transform": "copy"
          } ]
        } ],
        "source": [ {
          "context": "s",
          "element": "manifestation",
          "variable": "sman"
        } ],
        "target": [ {
          "parameter": [ {
            "valueId": "tgt"
          } ],
          "transform": "copy"
        } ]
      } ],
      "source": [ {
        "context": "src",
        "element": "reaction",
        "variable": "s"
      } ],
      "target": [ {
        "parameter": [ {
          "valueId": "tgt"
        } ],
        "transform": "copy"
      } ]
    } ],
    "input": [ {
      "mode": "source",
      "name": "src",
      "type": "Allergy"
    }, {
      "mode": "target",
      "name": "tgt",
      "type": "ObservationTable"
    } ]
  } ],
  "publisher": "HL7 International / Biomedical Research and Regulation",
  "jurisdiction": [ {
    "coding": [ {
      "code": "001",
      "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
      "display": "World"
    } ]
  } ],
  "name": "AllergyMap",
  "type": null,
  "experimental": null,
  "resourceType": "StructureMap",
  "title": "Mapping Allergy resource to Observation OMOP Domain",
  "package_version": "1.0.0-ballot",
  "extension": [ {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
    "valueCode": "brr"
  }, {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
    "valueInteger": 1,
    "_valueInteger": {
      "extension": [ {
        "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
        "valueCanonical": "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
      } ]
    }
  }, {
    "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
    "valueCode": "informative",
    "_valueCode": {
      "extension": [ {
        "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
        "valueCanonical": "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"
      } ]
    }
  } ],
  "structure": [ {
    "url": "http://hl7.org/fhir/StructureDefinition/AllergyIntolerance",
    "mode": "source",
    "alias": "Allergy"
  }, {
    "url": "http://hl7.org/fhir/uv/omop/StructureDefinition/Observation",
    "mode": "target",
    "alias": "ObservationTable"
  } ],
  "status": "draft",
  "id": "477b46ce-9d9c-43d4-a564-ed0ef80b0ecb",
  "kind": null,
  "url": "http://hl7.org/fhir/uv/omop/StructureMap/AllergyMap",
  "version": "1.0.0-ballot",
  "contact": [ {
    "name": "HL7 International / Biomedical Research and Regulation",
    "telecom": [ {
      "value": "http://www.hl7.org/Special/committees/rcrim",
      "system": "url"
    } ]
  } ]
}