description: Collection represents a set of samples and/or data items collected and/or derived in a common context and stored under a common stewardship and available for future research
package_name: eu.miabis.r4
derivation: constraint
name: Collection
type: Group
elements:
  extension:
    index: 0
    slicing:
      rules: open
      ordered: false
      discriminator:
      - {path: url, type: value}
      min: null
      slices:
        numberOfSubjects:
          match: {url: null}
          schema: {type: Extension, short: Total number of subjects included in the collection., mustSupport: true, url: 'https://fhir.bbmri-eric.eu/StructureDefinition/miabis-number-of-subjects-extension', index: 1}
          min: 0
          max: 1
        inclusionCriteria:
          match: {url: null}
          schema: {type: Extension, short: Information on type of parameters that determine which subjects will become collection participants., mustSupport: true, url: 'https://fhir.bbmri-eric.eu/StructureDefinition/miabis-inclusion-criteria-extension', index: 2}
          min: 0
        MemberEntity:
          match: {url: null}
          schema:
            type: Extension
            mustSupport: true
            url: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-member-entity-extension
            index: 3
            elements:
              value:
                choices: [valueReference]
                index: 5
              valueReference:
                type: Reference
                choiceOf: value
                refers: ['http://hl7.org/fhir/StructureDefinition/Specimen']
                index: 6
  identifier: {short: ID of the collection., mustSupport: true, index: 7}
  active: {short: The state of the collection functions., mustSupport: true, index: 8}
  type:
    short: The type of resources this group contains. For this resource type, this is always set to person. (should be specimen, but this is only supported in R5)
    pattern: {type: Code, value: person}
    index: 9
  name: {short: Name of the collection (preferably in English)., mustSupport: true, index: 10}
  managingEntity:
    type: Reference
    short: Organization resource containing details of this collection, such as contact information, publications, etc.
    mustSupport: true
    refers: ['https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection-organization']
    index: 11
  characteristic:
    array: true
    min: 2
    index: 12
    slicing:
      rules: open
      discriminator:
      - {path: code, type: value}
      min: 2
      slices:
        ageRange:
          match:
            code:
              coding:
              - {code: Age, system: 'https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS'}
          schema:
            short: Age of youngest and oldest sample donor at the time of sample donation.
            mustSupport: true
            index: 13
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: Age, system: 'https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS'}
                index: 14
              value:
                choices: [valueRange]
                index: 16
              valueRange: {type: Range, choiceOf: value, index: 17}
        sex:
          match:
            code:
              coding:
              - {code: Sex, system: 'https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS'}
          schema:
            short: The sex of the individuals in the collection.
            mustSupport: true
            array: true
            min: 1
            _required: true
            index: 18
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: Sex, system: 'https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS'}
                index: 19
              value:
                choices: [valueCodeableConcept]
                index: 21
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 22}
        storageTemperature:
          match:
            code:
              coding:
              - {code: StorageTemperature, system: 'https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS'}
          schema:
            short: The long-term storage temperature at which the sample(s) are stored after preparation, based on SPREC v3.
            mustSupport: true
            array: true
            index: 23
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: StorageTemperature, system: 'https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS'}
                index: 24
              value:
                choices: [valueCodeableConcept]
                index: 26
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 27}
        materialType:
          match:
            code:
              coding:
              - {code: MaterialType, system: 'https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS'}
          schema:
            short: The biospecimen saved from a biological entity for propagation e.g. testing, diagnostics, treatment or research purposes.
            mustSupport: true
            array: true
            min: 1
            _required: true
            index: 28
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: MaterialType, system: 'https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS'}
                index: 29
              value:
                choices: [valueCodeableConcept]
                index: 31
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 32}
        diagnosis:
          match:
            code:
              coding:
              - {code: Diagnosis, system: 'https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS'}
          schema:
            short: The diagnosis of the individuals in the collection.
            mustSupport: true
            array: true
            index: 33
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: Diagnosis, system: 'https://fhir.bbmri-eric.eu/CodeSystem/miabis-characteristicCS'}
                index: 34
              value:
                choices: [valueCodeableConcept]
                index: 36
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 37}
package_version: 1.3.0
extensions:
  numberOfSubjects: {url: 'https://fhir.bbmri-eric.eu/StructureDefinition/miabis-number-of-subjects-extension', min: 0, max: 1, type: Extension, short: Total number of subjects included in the collection., mustSupport: true, index: 1}
  inclusionCriteria: {url: 'https://fhir.bbmri-eric.eu/StructureDefinition/miabis-inclusion-criteria-extension', min: 0, type: Extension, short: Information on type of parameters that determine which subjects will become collection participants., mustSupport: true, index: 2}
  MemberEntity:
    url: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-member-entity-extension
    type: Extension
    mustSupport: true
    index: 3
    elements:
      value:
        choices: [valueReference]
        index: 5
      valueReference:
        type: Reference
        choiceOf: value
        refers: ['http://hl7.org/fhir/StructureDefinition/Specimen']
        index: 6
class: profile
kind: resource
url: https://fhir.bbmri-eric.eu/StructureDefinition/miabis-collection
base: http://hl7.org/fhir/StructureDefinition/Group
version: 1.3.0
required: [name, identifier, managingEntity]