description: The Region Studied profile is used to assert actual regions studied for the performed test(s). Intended coverage areas may differ from actual coverage areas (e.g. due to technical limitations during test performance).
package_name: hl7.fhir.uv.genomics-reporting
derivation: constraint
name: RegionStudied
type: Observation
elements:
  code:
    pattern:
      type: CodeableConcept
      value:
        coding:
        - {code: 53041-0, system: 'http://loinc.org'}
    index: 0
  value:
    choices: []
    index: 2
  component:
    short: Gene studied [ID]
    index: 3
    slicing:
      slices:
        gene-studied:
          match: {}
          schema:
            short: Gene studied [ID]
            index: 3
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 48018-6, system: 'http://loinc.org'}
                index: 4
              value:
                short: If no HGNC code issued for this gene yet, NCBI gene IDs SHALL be used.
                choices: [valueCodeableConcept]
                index: 6
              valueCodeableConcept: {type: CodeableConcept, short: 'If no HGNC code issued for this gene yet, NCBI gene IDs SHALL be used.', choiceOf: value, index: 7}
            required: [value, valueCodeableConcept]
        gene-mutations:
          match: {}
          schema:
            short: Gene Mutations ID
            index: 8
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 36908-2, system: 'http://loinc.org'}
                index: 9
              value:
                choices: [valueCodeableConcept]
                index: 11
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 12}
            required: [value, valueCodeableConcept]
        region-description:
          match: {}
          schema:
            short: Region Description
            index: 13
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 81293-3, system: 'http://loinc.org'}
                index: 14
              value:
                choices: [valueString]
                index: 16
              valueString: {type: string, choiceOf: value, index: 17}
        region-coverage:
          match: {}
          schema:
            short: Region Coverage
            index: 18
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: region-coverage, system: 'http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/TbdCodes'}
                index: 19
              value:
                choices: [valueQuantity]
                index: 21
              valueQuantity: {type: Quantity, choiceOf: value, index: 22}
        ranges-examined:
          match: {}
          schema:
            short: Range(s) of DNA sequence examined
            array: true
            index: 23
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 51959-5, system: 'http://loinc.org'}
                index: 24
              value:
                choices: [valueRange]
                index: 26
              valueRange: {type: Range, choiceOf: value, index: 27}
        coordinate-system:
          match: {}
          schema:
            short: Coordinate System
            index: 28
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 92822-6, system: 'http://loinc.org'}
                index: 29
              value:
                choices: [valueCodeableConcept]
                index: 31
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 32}
            required: [value, valueCodeableConcept]
        genomic-ref-seq:
          match: {}
          schema:
            short: Genomic reference sequence ID
            index: 33
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 48013-7, system: 'http://loinc.org'}
                index: 34
              value:
                choices: [valueCodeableConcept]
                index: 36
              valueCodeableConcept: {type: CodeableConcept, choiceOf: value, index: 37}
            required: [value, valueCodeableConcept]
        uncallable-regions:
          match: {}
          schema:
            short: Uncallable Sub-regions
            array: true
            index: 38
            elements:
              code:
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: uncallable-regions, system: 'http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/TbdCodes'}
                index: 39
              value:
                choices: [valueRange]
                index: 41
              valueRange: {type: Range, choiceOf: value, index: 42}
package_version: 1.1.0
class: profile
kind: resource
url: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/region-studied
base: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-base
version: 1.1.0