description: Properties common to genomic implications expressed as computable discrete elements.
package_name: hl7.fhir.uv.genomics
derivation: constraint
name: GenomicImplication
abstract: true
type: Observation
elements:
  extension:
    type: Extension
    short: Attachments and/or related metadata or citations
    url: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-artifact
    index: 0
    slicing:
      slices:
        related-artifact:
          match: {}
          schema: {type: Extension, short: Attachments and/or related metadata or citations, url: 'http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-artifact', index: 0}
          min: 0
          max: 1
  value:
    choices: []
    index: 2
  derivedFrom:
    index: 3
    slicing:
      rules: open
      description: Slice based on the resolve().code type
      discriminator:
      - {path: $this.resolve(), type: profile}
      min: 1
      slices:
        variant:
          match: {}
          schema:
            type: Reference
            short: Variant the implication is derived from
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant']
            array: true
            index: 4
          min: 0
        genotype:
          match: {}
          schema:
            type: Reference
            short: Genotype the implication is derived from
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype']
            array: true
            index: 5
          min: 0
        haplotype:
          match: {}
          schema:
            type: Reference
            short: Haplotype the implication is derived from
            refers: ['http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype']
            array: true
            index: 6
          min: 0
  component:
    short: Level of Evidence
    array: true
    index: 7
    slicing:
      slices:
        evidence-level:
          match: {}
          schema:
            short: Level of Evidence
            array: true
            index: 7
            elements:
              code:
                short: 93044-6
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: 93044-6, system: 'http://loinc.org'}
                index: 8
              value:
                short: 1A | 1B | 2A | 2B | 3 | 4 | 4-star | 3-star | 2-star | 1-star | no-star
                choices: [valueCodeableConcept]
                index: 10
              valueCodeableConcept: {type: CodeableConcept, short: 1A | 1B | 2A | 2B | 3 | 4 | 4-star | 3-star | 2-star | 1-star | no-star, choiceOf: value, index: 11}
            required: [value, valueCodeableConcept]
        prognosis:
          match: {}
          schema:
            short: Prognosis
            index: 12
            elements:
              code:
                short: prognostic-implication
                pattern:
                  type: CodeableConcept
                  value:
                    coding:
                    - {code: prognostic-implication, system: 'http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs'}
                index: 13
              value:
                short: Better outcome | poorer outcome
                choices: [valueCodeableConcept]
                index: 15
              valueCodeableConcept: {type: CodeableConcept, short: Better outcome | poorer outcome, choiceOf: value, index: 16}
            required: [value, valueCodeableConcept]
package_version: reporting-2.0.0
extensions:
  related-artifact: {url: 'http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-artifact', min: 0, max: 1, type: Extension, short: Attachments and/or related metadata or citations, index: 0}
class: profile
kind: resource
url: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/implication
base: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-base
version: 2.0.0
required: [derivedFrom]