description: Logical Model for the graphical reprensentation of the respective Art-Decor Model
package_name: de.medizininformatikinitiative.kerndatensatz.mikrobiologie
derivation: specialization
name: MII_LM_Mikrobio_Logical_Model
type: https://www.medizininformatik-initiative.de/fhir/ext/modul-mikrobio/StructureDefinition/mii-lm-mikrobio-logical-model
elements:
  Culture_diagnostics:
    type: BackboneElement
    short: Culture diagnostics
    array: true
    index: 0
    elements:
      Detection: {type: CodeableConcept, short: Detection of microorganism, array: true, index: 1}
      OrganismName: {type: CodeableConcept, short: Name of organsim, array: true, index: 2}
      CultureMethod: {type: CodeableConcept, short: Culture method, array: true, index: 3}
      MRGN: {type: BackboneElement, short: Multi-resistant Gram-Negative Organism Classification, array: true, index: 4}
      ColonyCount: {type: BackboneElement, short: Colony count, array: true, index: 5}
      Resistance: {type: BackboneElement, short: Determination of resistance, array: true, index: 6}
  Microscopy:
    type: BackboneElement
    short: Microscopic investigation
    array: true
    index: 7
    elements:
      Detection: {type: CodeableConcept, short: Detection of microorganism, array: true, index: 8}
      OrganismName: {type: CodeableConcept, short: Name of the organism, array: true, index: 9}
      SemiquantitativeResult: {type: CodeableConcept, short: Semiquantitative result, array: true, index: 10}
      QuantitativeResult: {type: CodeableConcept, short: Quantitative result, array: true, index: 11}
      Method: {type: CodeableConcept, short: Microscopy method, array: true, index: 12}
      Morphology: {type: CodeableConcept, short: Morphology, array: true, index: 13}
      BarlettScore: {type: CodeableConcept, short: Barlett score, array: true, index: 14}
      NugentScore: {type: CodeableConcept, short: Nugent score, array: true, index: 15}
  Molecular_diagnostics:
    type: BackboneElement
    short: Molecular diagnostics
    array: true
    index: 16
    elements:
      Detection: {type: CodeableConcept, short: Detection of organism, array: true, index: 17}
      OrganismName: {type: CodeableConcept, short: Name of organism, array: true, index: 18}
      PCRQuantitativeResult: {type: CodeableConcept, short: PCR quantitative result, array: true, index: 19}
      CycleThreshold: {type: CodeableConcept, short: Cyvle threshold, array: true, index: 20}
  Serology_Immunology:
    type: BackboneElement
    short: Serology and immunology
    array: true
    index: 21
    elements:
      QuantitativeResultAntigenTest: {type: Quantity, short: Quantitative result of the antigen test, array: true, index: 22}
      QualitativeResultAntigenTest: {type: CodeableConcept, short: Qualitative result of the antigentest, array: true, index: 23}
      QuantitativeResultSerologyTest: {type: Quantity, short: Quantitative result of the serology test, array: true, index: 24}
      QualitativeResultSerologyTest: {type: CodeableConcept, short: Qualitative result of the serology test, array: true, index: 25}
      Avidity: {type: CodeableConcept, short: Avidity, array: true, index: 26}
  Further_properties:
    type: BackboneElement
    short: Further properties of the organism
    array: true
    index: 27
    elements:
      MDROType: {type: CodeableConcept, short: Type of multi-drug resistant organism, array: true, index: 28}
      Virulence_factor: {type: BackboneElement, short: Virulence factor, array: true, index: 29}
      Resistance_mechanism:
        type: BackboneElement
        short: Mechanism of resistance
        array: true
        index: 30
        elements:
          ResistanceGene: {type: CodeableConcept, short: Resistance gene, array: true, index: 31}
          ResistanceMutation: {type: CodeableConcept, short: Resistance mutation, array: true, index: 32}
      ExpectedSusceptiibilty: {type: CodeableConcept, short: Expected susceptibility by Genotyping, array: true, index: 33}
      MRGNClassification: {type: CodeableConcept, short: Robert Koch institute classification of MRGN, array: true, index: 34}
  DiagnosticReport: {type: BackboneElement, short: Diagnostic Report, array: true, index: 35}
package_version: 2024.0.0
class: logical
kind: logical
url: https://www.medizininformatik-initiative.de/fhir/ext/modul-mikrobio/StructureDefinition/mii-lm-mikrobio-logical-model
base: http://hl7.org/fhir/StructureDefinition/Element
version: 2024.0.0