{
"description": "This value set includes the codes for microorganisms from the SNOMED International Patient Set (IPS) subset of SNOMED CT (IPS Free Set).",
"compose": {
"include": [ {
"filter": [ {
"op": "=",
"value": "(< 409822003 |Domain Bacteria| OR < 441649000 |Class Cestoda and/or Class Trematoda and/or Phylum Nemata| OR < 414561005 |Kingdom Fungi| OR < 84676004 |Prion| OR < 49872002 |Virus| OR < 417396000 |Kingdom Protozoa| OR < 419036000 |Domain Archaea (organism)| OR < 426785004 |Kingdom Chromista| OR < 370570004 |Kingdom Protoctista| OR < 417377004 |Kingdom Viridiplantae| OR < 243565002 |Slime Mould|) AND ^ 816080008 |International Patient Summary (foundation metadata concept)|",
"property": "constraint"
} ],
"system": "http://snomed.info/sct",
"version": "http://snomed.info/sct/900000000000207008"
} ]
},
"_filename": "ValueSet-results-microorganism-snomed-ct-ips-free-set.json",
"package_name": "hl7.fhir.uv.ips",
"date": "2022-08-20T13:54:14+00:00",
"meta": {
"profile": [ "http://hl7.org/fhir/StructureDefinition/shareablevalueset" ]
},
"publisher": "Health Level Seven International - Patient Care Work Group",
"jurisdiction": [ {
"coding": [ {
"code": "001",
"system": "http://unstats.un.org/unsd/methods/m49/m49.htm"
} ]
} ],
"name": "ResultsMicroorganismSnomedCtIpsFreeSet",
"copyright": "The SNOMED International IPS Terminology is distributed by International Health Terminology Standards Development Organisation, trading as SNOMED International, and is subject the terms of the [Creative Commons Attribution 4.0 International Public License](https://creativecommons.org/licenses/by/4.0/). For more information, see [SNOMED IPS Terminology](https://www.snomed.org/snomed-ct/Other-SNOMED-products/international-patient-summary-terminology)",
"type": null,
"experimental": "false",
"resourceType": "ValueSet",
"expansion": {
"total": 1343,
"offset": 0,
"contains": [ {
"code": "646165971000087107",
"system": "http://snomed.info/sct",
"display": "Shigella flexneri 5a"
}, {
"code": "840533007",
"system": "http://snomed.info/sct",
"display": "SARS-CoV-2"
}, {
"code": "767451000",
"system": "http://snomed.info/sct",
"display": "Trichinella nelsoni"
}, {
"code": "767450004",
"system": "http://snomed.info/sct",
"display": "Trichinella nativa"
}, {
"code": "767285001",
"system": "http://snomed.info/sct",
"display": "Streptococcus pneumoniae Danish serotype 42"
}, {
"code": "767284002",
"system": "http://snomed.info/sct",
"display": "Streptococcus pneumoniae Danish serotype 43"
}, {
"code": "767283008",
"system": "http://snomed.info/sct",
"display": "Streptococcus pneumoniae Danish serotype 44"
}, {
"code": "767282003",
"system": "http://snomed.info/sct",
"display": "Streptococcus pneumoniae Danish serotype 45"
}, {
"code": "767281005",
"system": "http://snomed.info/sct",
"display": "Streptococcus pneumoniae Danish serotype 46"
}, {
"code": "767275002",
"system": "http://snomed.info/sct",
"display": "Streptococcus pneumoniae Danish serotype 48"
}, {
"code": "767274003",
"system": "http://snomed.info/sct",
"display": "Streptococcus pneumoniae Danish serotype 40"
}, {
"code": "767208001",
"system": "http://snomed.info/sct",
"display": "Streptococcus pneumoniae Danish serotype 39"
}, {
"code": "767204004",
"system": "http://snomed.info/sct",
"display": "Streptococcus pneumoniae Danish serotype 38"
}, {
"code": "767202000",
"system": "http://snomed.info/sct",
"display": "Streptococcus pneumoniae serogroup 20"
}, {
"code": "767201007",
"system": "http://snomed.info/sct",
"display": "Streptococcus pneumoniae Danish serotype 34"
}, {
"code": "736946001",
"system": "http://snomed.info/sct",
"display": "Cryptococcus gattii genotype VGI"
}, {
"code": "736945002",
"system": "http://snomed.info/sct",
"display": "Cryptococcus gattii genotype VGIII"
}, {
"code": "736944003",
"system": "http://snomed.info/sct",
"display": "Cryptococcus neoformans var. grubii genotype VNI"
}, {
"code": "736943009",
"system": "http://snomed.info/sct",
"display": "Cryptococcus neoformans var. grubii genotype VNII"
}, {
"code": "733595003",
"system": "http://snomed.info/sct",
"display": "Enterohemorrhagic Escherichia coli serogroup O:nonmotile"
}, {
"code": "732254006",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:19,8"
}, {
"code": "732253000",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:19,8"
}, {
"code": "732210000",
"system": "http://snomed.info/sct",
"display": "Measles virus genotype G1"
}, {
"code": "732209005",
"system": "http://snomed.info/sct",
"display": "Measles virus genotype B1"
}, {
"code": "732208002",
"system": "http://snomed.info/sct",
"display": "Measles virus genotype D1"
}, {
"code": "732207007",
"system": "http://snomed.info/sct",
"display": "Measles virus genotype E"
}, {
"code": "732206003",
"system": "http://snomed.info/sct",
"display": "Measles virus genotype F"
}, {
"code": "726499009",
"system": "http://snomed.info/sct",
"display": "Fluoroquinolone resistant Shigella"
}, {
"code": "726497006",
"system": "http://snomed.info/sct",
"display": "Fluoroquinolone resistant Campylobacter"
}, {
"code": "726495003",
"system": "http://snomed.info/sct",
"display": "Ampicillin resistant Haemophilus influenzae"
}, {
"code": "725473009",
"system": "http://snomed.info/sct",
"display": "Human alphaherpesvirus 3 clade 5"
}, {
"code": "725472004",
"system": "http://snomed.info/sct",
"display": "Human alphaherpesvirus 3 clade 4"
}, {
"code": "725471006",
"system": "http://snomed.info/sct",
"display": "Human alphaherpesvirus 3 clade 3"
}, {
"code": "725470007",
"system": "http://snomed.info/sct",
"display": "Human alphaherpesvirus 3 clade 2"
}, {
"code": "725469006",
"system": "http://snomed.info/sct",
"display": "Human alphaherpesvirus 3 clade 1"
}, {
"code": "725454005",
"system": "http://snomed.info/sct",
"display": "Mumps genotype N"
}, {
"code": "725453004",
"system": "http://snomed.info/sct",
"display": "Mumps genotype L"
}, {
"code": "725452009",
"system": "http://snomed.info/sct",
"display": "Mumps genotype K"
}, {
"code": "725451002",
"system": "http://snomed.info/sct",
"display": "Mumps genotype J"
}, {
"code": "725450001",
"system": "http://snomed.info/sct",
"display": "Mumps genotype I"
}, {
"code": "725449001",
"system": "http://snomed.info/sct",
"display": "Mumps genotype H"
}, {
"code": "725448009",
"system": "http://snomed.info/sct",
"display": "Mumps genotype G"
}, {
"code": "725447004",
"system": "http://snomed.info/sct",
"display": "Mumps genotype F"
}, {
"code": "725446008",
"system": "http://snomed.info/sct",
"display": "Mumps genotype D"
}, {
"code": "725445007",
"system": "http://snomed.info/sct",
"display": "Mumps genotype C"
}, {
"code": "725444006",
"system": "http://snomed.info/sct",
"display": "Mumps genotype B"
}, {
"code": "725443000",
"system": "http://snomed.info/sct",
"display": "Mumps genotype A"
}, {
"code": "722808002",
"system": "http://snomed.info/sct",
"display": "Vibrio vulnificus biotype 3"
}, {
"code": "722807007",
"system": "http://snomed.info/sct",
"display": "Vibrio vulnificus biotype 2"
}, {
"code": "722806003",
"system": "http://snomed.info/sct",
"display": "Vibrio vulnificus biotype 1"
}, {
"code": "722789000",
"system": "http://snomed.info/sct",
"display": "Toxigenic Corynebacterium diphtheriae type belfanti"
}, {
"code": "722356002",
"system": "http://snomed.info/sct",
"display": "Neisseria meningitidis, beta lactamase positive"
}, {
"code": "722355003",
"system": "http://snomed.info/sct",
"display": "Neisseria meningitidis, beta lactamase negative"
}, {
"code": "722353005",
"system": "http://snomed.info/sct",
"display": "Haemophilus influenzae, beta lactamase positive"
}, {
"code": "722351007",
"system": "http://snomed.info/sct",
"display": "Haemophilus influenzae, beta lactamase negative"
}, {
"code": "722350008",
"system": "http://snomed.info/sct",
"display": "Toxigenic Corynebacterium diphtheriae type mitis"
}, {
"code": "722349008",
"system": "http://snomed.info/sct",
"display": "Toxigenic Corynebacterium diphtheriae type intermedius"
}, {
"code": "722346001",
"system": "http://snomed.info/sct",
"display": "Toxigenic Corynebacterium diphtheriae type gravis"
}, {
"code": "722251009",
"system": "http://snomed.info/sct",
"display": "Mycobacterium simiae complex"
}, {
"code": "722246003",
"system": "http://snomed.info/sct",
"display": "Toxigenic Corynebacterium pseudotuberculosis"
}, {
"code": "721980008",
"system": "http://snomed.info/sct",
"display": "Shigella flexneri serovar 6 biotype Manchester"
}, {
"code": "721920006",
"system": "http://snomed.info/sct",
"display": "Orthopoxvirus species, not Variola virus"
}, {
"code": "721911002",
"system": "http://snomed.info/sct",
"display": "ESBL Shigella sonnei"
}, {
"code": "720871003",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:4,33"
}, {
"code": "720870002",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:4,33"
}, {
"code": "720869003",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 3 non-serotypable"
}, {
"code": "720805006",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 5 serotype O:2,3"
}, {
"code": "720804005",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 4 serotype O:3"
}, {
"code": "720803004",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 3 serotype O:5,27"
}, {
"code": "720802009",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 3 serotype O:3"
}, {
"code": "720801002",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 3 serotype O:1,2,3"
}, {
"code": "720800001",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 2 serotype O:9"
}, {
"code": "720799000",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 2 serotype O:5,27"
}, {
"code": "720798008",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1B serotype O:21"
}, {
"code": "720797003",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1B serotype O:20"
}, {
"code": "720796007",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1B serotype O:18"
}, {
"code": "720795006",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1B serotype O:13a,13b"
}, {
"code": "720794005",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1B serotype O:8"
}, {
"code": "720793004",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1B non-serotypable"
}, {
"code": "720792009",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:57"
}, {
"code": "720791002",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:36"
}, {
"code": "720790001",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:22"
}, {
"code": "720788002",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:16"
}, {
"code": "720787007",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:14"
}, {
"code": "720786003",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:10"
}, {
"code": "720785004",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:7,13"
}, {
"code": "720784000",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:7,13"
}, {
"code": "720782001",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:7,8"
}, {
"code": "720781008",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:6,31"
}, {
"code": "720780009",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:6,30"
}, {
"code": "720779006",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O:5"
}, {
"code": "720778003",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A serotype O rough"
}, {
"code": "720777008",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A non-serotypable"
}, {
"code": "720776004",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:2,3"
}, {
"code": "720775000",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:1,2,3"
}, {
"code": "720774001",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:18"
}, {
"code": "720773007",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:57"
}, {
"code": "720772002",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:36"
}, {
"code": "720771009",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:22"
}, {
"code": "720769009",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:16"
}, {
"code": "720768001",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:10"
}, {
"code": "720767006",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:7,8"
}, {
"code": "720766002",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:6,31"
}, {
"code": "720765003",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O:6,30"
}, {
"code": "720764004",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica serogroup O rough"
}, {
"code": "720763005",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 5"
}, {
"code": "720762000",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 4"
}, {
"code": "720761007",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 3"
}, {
"code": "720760008",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 2"
}, {
"code": "720759003",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1B"
}, {
"code": "720758006",
"system": "http://snomed.info/sct",
"display": "Yersinia enterocolitica biotype 1A"
}, {
"code": "720723009",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group II type E and F"
}, {
"code": "720722004",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group II type B and E"
}, {
"code": "720721006",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group II type B and F"
}, {
"code": "720720007",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group II type F"
}, {
"code": "720719001",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group II type E"
}, {
"code": "720718009",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group II type B"
}, {
"code": "720717004",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group I type B and F"
}, {
"code": "720716008",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group I type A and F"
}, {
"code": "720715007",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group I type A and B"
}, {
"code": "720714006",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group I type F"
}, {
"code": "720713000",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group I type B"
}, {
"code": "720712005",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group I type A"
}, {
"code": "720711003",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group IV"
}, {
"code": "720710002",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group III"
}, {
"code": "720709007",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group II"
}, {
"code": "720708004",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group I"
}, {
"code": "720325000",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum type G"
}, {
"code": "720324001",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group IV type G"
}, {
"code": "720323007",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group III type D"
}, {
"code": "720312008",
"system": "http://snomed.info/sct",
"display": "Clostridium botulinum Group III type C"
}, {
"code": "719913002",
"system": "http://snomed.info/sct",
"display": "Toxigenic Corynebacterium ulcerans"
}, {
"code": "719028004",
"system": "http://snomed.info/sct",
"display": "Streptococcus pneumoniae Danish serotype 6D"
}, {
"code": "718809000",
"system": "http://snomed.info/sct",
"display": "Mycobacterium parakoreense"
}, {
"code": "718808008",
"system": "http://snomed.info/sct",
"display": "Mycobacterium minnesotense"
}, {
"code": "716531008",
"system": "http://snomed.info/sct",
"display": "Multiple drug resistant methicillin resistant Staphylococcus aureus"
}, {
"code": "716530009",
"system": "http://snomed.info/sct",
"display": "Non-multiple drug resistant methicillin resistant Staphylococcus aureus"
}, {
"code": "715358008",
"system": "http://snomed.info/sct",
"display": "Streptococcus agalactiae serotype IX"
}, {
"code": "715357003",
"system": "http://snomed.info/sct",
"display": "Streptococcus agalactiae serotype VI"
}, {
"code": "715335005",
"system": "http://snomed.info/sct",
"display": "Vibrio cholerae serogroup O141"
}, {
"code": "715307006",
"system": "http://snomed.info/sct",
"display": "Carbapenem resistant Escherichia coli"
}, {
"code": "713924007",
"system": "http://snomed.info/sct",
"display": "Non-hemolytic Streptococcus agalactiae"
}, {
"code": "713611009",
"system": "http://snomed.info/sct",
"display": "Mycobacterium chlorophenolicum"
}, {
"code": "712913003",
"system": "http://snomed.info/sct",
"display": "Mycobacterium europaeum"
}, {
"code": "712912008",
"system": "http://snomed.info/sct",
"display": "Mycobacterium heraklionense"
}, {
"code": "712911001",
"system": "http://snomed.info/sct",
"display": "Mycobacterium kyorinense"
}, {
"code": "712910000",
"system": "http://snomed.info/sct",
"display": "Mycobacterium riyadhense"
}, {
"code": "712909005",
"system": "http://snomed.info/sct",
"display": "Mycobacterium vulneris"
}, {
"code": "712666003",
"system": "http://snomed.info/sct",
"display": "Vancomycin intermediate Enterococcus faecium"
}, {
"code": "712665004",
"system": "http://snomed.info/sct",
"display": "Vancomycin resistant Enterococcus faecium"
}, {
"code": "712664000",
"system": "http://snomed.info/sct",
"display": "Vancomycin intermediate Enterococcus faecalis"
}, {
"code": "712663006",
"system": "http://snomed.info/sct",
"display": "Vancomycin resistant Enterococcus faecalis"
}, {
"code": "710891006",
"system": "http://snomed.info/sct",
"display": "Methicillin resistant Staphylococcus"
}, {
"code": "710564002",
"system": "http://snomed.info/sct",
"display": "Panton-Valentine leukocidin producing Staphylococcus aureus"
}, {
"code": "710347001",
"system": "http://snomed.info/sct",
"display": "Toxigenic Vibrio cholerae, O1"
}, {
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